Non-Coding RNA Search

Ss1.1-Pig2-44P02.5

Sequence:


               
               GCATTTATTGAGCTAGACCCCTTCCTAGCACTTGCCCTGTACTGCCCATCTCTTCAAGGG
CCCCACGAGGTAGGTGCTCCTGCCGCCCCATTCTGCAGACGAGGACACGGAGGCAAAGAC
AGGTGTGGCTCAAGGTCGAGGGGGAGCAGGCTCCTGCTCTGAGTCAGGGAGGCAGCTGCC
CTGGGGGAAGCGGTGGGGTCGGGCACCGAGCCCACTCTGCTGCAGGCTGAGGCCTGGAGT
GTAGGGTGAGCCCAGGTGTCTCCCAGGGGCGGCTGGGAAGCTCCCAGATTTGAGCCAAGC
TCACCCAGGCCCTCACCTCCCCGCAGGCCTCAGCCTACCTGAAGCAGAACAAGTACCAGC
AGGCGGAAGAGCTGTACAAAGAAATCCTCCGCAGGGAGGACCTGCCCGCGCCCCTCGGTG
AGCCCCCAGCCCCGCCCTCCCCCAGGAGGCTGCTCAGGGTCCCCACTACCATGTCCTCAT
CTGTTCCCTAGGAGCCCTGAAAACAGGCACAGCCGGGGGTGCAGAACAGCAGGTGAGGAG
GGGCTTCGCTCGGCTCCCGGGGGATGGGGGGGGTGGACCGGCTGGATGGAGGACTGACTG
GGCGCCCCCCTCCAGAGGCTTCGGCGGAGCAGCTCCTTCTCCAAGCTCCGGGAGTCCATC
CGGCGGGGAAGCGAGAAGCTGGTCTCCCGGCTCCGAAGGGGAGGCGGCGGCAGGGGCAGC
GGGGTGAGTGTGGGATCAGGTGGGGGAGAGCCTGGACAGACGCCCCCTCTGTAGCCCTCC
TGTCCTGCTCAAGAACCTTCCACGGCTCCCGTCTCCCCCGCAACACATACAAGCACCCCT
GTGCTGGAGGGTCTGCCCCAGGACAGGAGCCCGACACGCCCAGACTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTTATTGAGCTAGACCCCTTCCTAGCACTTGCCCTGTACTGCCCATCTCTTCAAGGG
CCCCACGAGGTAGGTGCTCCTGCCGCCCCATTCTGCAGACGAGGACACGGAGGCAAAGAC
AGGTGTGGCTCAAGGTCGAGGGGGAGCAGGCTCCTGCTCTGAGTCAGGGAGGCAGCTGCC
CTGGGGGAAGCGGTGGGGTCGGGCACCGAGCCCACTCTGCTGCAGGCTGAGGCCTGGAGT
GTAGGGTGAGCCCAGGTGTCTCCCAGGGGCGGCTGGGAAGCTCCCAGATTTGAGCCAAGC
TCACCCAGGCCCTCACCTCCCCGCAGGCCTCAGCCTACCTGAAGCAGAACAAGTACCAGC
AGGCGGAAGAGCTGTACAAAGAAATCCTCCGCAGGGAGGACCTGCCCGCGCCCCTCGGTG
AGCCCCCAGCCCCGCCCTCCCCCAGGAGGCTGCTCAGGGTCCCCACTACCATGTCCTCAT
CTGTTCCCTAGGAGCCCTGAAAACAGGCACAGCCGGGGGTGCAGAACAGCAGGTGAGGAG
GGGCTTCGCTCGGCTCCCGGGGGATGGGGGGGGTGGACCGGCTGGATGGAGGACTGACTG
GGCGCCCCCCTCCAGAGGCTTCGGCGGAGCAGCTCCTTCTCCAAGCTCCGGGAGTCCATC
CGGCGGGGAAGCGAGAAGCTGGTCTCCCGGCTCCGAAGGGGAGGCGGCGGCAGGGGCAGC
GGGGTGAGTGTGGGATCAGGTGGGGGAGAGCCTGGACAGACGCCCCCTCTGTAGCCCTCC
TGTCCTGCTCAAGAACCTTCCACGGCTCCCGTCTCCCCCGCAACACATACAAGCACCCCT
GTGCTGGAGGGTCTGCCCCAGGACAGGAGCCCGACACGCCCAGACTCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               256-353, - strand, RNAz p=0.999936
               

               
               467-580, - strand, RNAz p=0.573168

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-353, - strand, RNAz p=0.999936
               

               
               467-580, - strand, RNAz p=0.573168

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               402-488, - strand, RNAmicro p=0.932498

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               402-488, - strand, RNAmicro p=0.932498

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-729, gnl|bosTau2|chr18 (38518487-38517740)
               

               
               4-729, gnl|Hg17|chr19 (50544950-50545851)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-729, gnl|bosTau2|chr18 (38518487-38517740)
               

               
               4-729, gnl|Hg17|chr19 (50544950-50545851)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	256-353, - strand, RNAz p=0.999936
	467-580, - strand, RNAz p=0.573168

	4-729, gnl\|bosTau2\|chr18 (38518487-38517740)
	4-729, gnl\|Hg17\|chr19 (50544950-50545851)

	eye (0.170503)
	lnt (0.142308)
	hlv (0.139256)
	ese (0.126502)
	med (0.116252)