Non-Coding RNA Search

Ss1.1-Pig2-45C08.5

Sequence:


               
               GACCTTGATGGAAAAAAAAAATATTTTTAAAAAAAAGATACACTGTGGAAGGGGGGAGAA
TCCCATAACTAACTGCTGAGGAGGGACCTGCTTTGGGGAGTAGGGGAAGGCCCAGGGAGC
GGGGCAGGGGGCTGCTCATTCACTCTGGGGATTCGCCATGGACACGTCTCAACTGCGCAA
GCTGCTCCCCCTGTTTCCCTGACCCCCTTCACCCTTCGGGGGCTGCTCAAGGGTAGGTGG
GAATGGGCGGTAGGAGGGGTTTTTTCACCCAGGGCTCTGGAAGGACACCAAACTGTTCTG
CTTGTTACCTTCCCTCCATCTTCTCCCTAACTTTCACAGTCCCCTCCTGCCTGCTCCTGT
CCTGCCAGGTCTGCCACCCACCCCACCCCTCTTTTCTGGCTCCCTGCCCCTCCAGATTGC
CTGGTGATCTATTTTGTTTCCTTTTGTGTTTCTTTTTCTGTTTTGAGTGTCTTTCTTTGC
AGGTTTCTGTAGCCGGAAGATCTCCGTTCCGCTCCCAGCGGCTCCAGTGTAAATTCCCCT
TTCCCCTGGGGAAATGCACTACCTTGTTTTGGGGGGTTTTGGGGCATTTTTTGTTTTTCA
GTTTTTTGTTTTGTTTTGTTTTTCTTTGCCTTTTTTTCCCTTTTATTTGGAGGGAATGGG
AGGAAGTGGGAACAGGGAGGTGGGAGGTGGATTTTGTTTATTTTTTTAGCTCATTTCCAG
GGGGTGGGAATTTTTTTTTTTTTTTTTTAATATGTGCATGAATAAAGTTGTTTTTGAAAA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTTGATGGAAAAAAAAAATATTTTTAAAAAAAAGATACACTGTGGAAGGGGGGAGAA
TCCCATAACTAACTGCTGAGGAGGGACCTGCTTTGGGGAGTAGGGGAAGGCCCAGGGAGC
GGGGCAGGGGGCTGCTCATTCACTCTGGGGATTCGCCATGGACACGTCTCAACTGCGCAA
GCTGCTCCCCCTGTTTCCCTGACCCCCTTCACCCTTCGGGGGCTGCTCAAGGGTAGGTGG
GAATGGGCGGTAGGAGGGGTTTTTTCACCCAGGGCTCTGGAAGGACACCAAACTGTTCTG
CTTGTTACCTTCCCTCCATCTTCTCCCTAACTTTCACAGTCCCCTCCTGCCTGCTCCTGT
CCTGCCAGGTCTGCCACCCACCCCACCCCTCTTTTCTGGCTCCCTGCCCCTCCAGATTGC
CTGGTGATCTATTTTGTTTCCTTTTGTGTTTCTTTTTCTGTTTTGAGTGTCTTTCTTTGC
AGGTTTCTGTAGCCGGAAGATCTCCGTTCCGCTCCCAGCGGCTCCAGTGTAAATTCCCCT
TTCCCCTGGGGAAATGCACTACCTTGTTTTGGGGGGTTTTGGGGCATTTTTTGTTTTTCA
GTTTTTTGTTTTGTTTTGTTTTTCTTTGCCTTTTTTTCCCTTTTATTTGGAGGGAATGGG
AGGAAGTGGGAACAGGGAGGTGGGAGGTGGATTTTGTTTATTTTTTTAGCTCATTTCCAG
GGGGTGGGAATTTTTTTTTTTTTTTTTTAATATGTGCATGAATAAAGTTGTTTTTGAAAA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-117, - strand, RNAz p=0.816979
               

               
               237-352, - strand, RNAz p=0.927393
               

               
               471-590, - strand, RNAz p=0.987229

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.816979
               

               
               237-352, - strand, RNAz p=0.927393
               

               
               471-590, - strand, RNAz p=0.987229

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               496-610, + strand, RNAmicro p=0.948283

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               496-610, + strand, RNAmicro p=0.948283

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-787, gnl|bosTau2|chr10 (13794365-13793587)
               

               
               1-787, gnl|Hg17|chr14 (22864427-22865213)
               

               
               1-787, gnl|Mm7|chr14 (49765080-49765857)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-787, gnl|bosTau2|chr10 (13794365-13793587)
               

               
               1-787, gnl|Hg17|chr14 (22864427-22865213)
               

               
               1-787, gnl|Mm7|chr14 (49765080-49765857)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               sme (0.610874)
               

               
               cst (0.560146)
               

               
               che (0.545256)
               

               
               fty (0.351679)
               

               
               cki (0.330469)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               eru (0.240096)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               cst (0.560146)
               

               
               che (0.545256)
               

               
               fty (0.351679)
               

               
               cki (0.330469)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               eru (0.240096)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-117, - strand, RNAz p=0.816979
	237-352, - strand, RNAz p=0.927393
	471-590, - strand, RNAz p=0.987229

	1-787, gnl\|bosTau2\|chr10 (13794365-13793587)
	1-787, gnl\|Hg17\|chr14 (22864427-22865213)
	1-787, gnl\|Mm7\|chr14 (49765080-49765857)

	sme (0.610874)
	cst (0.560146)
	che (0.545256)
	fty (0.351679)
	cki (0.330469)
	pty (0.285429)
	csk (0.281492)
	eru (0.240096)
	mcp (0.170648)
	cut (0.169924)
	nje (0.16592)
	cje (0.165235)
	csp (0.161186)
	hyp (0.142837)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)