Non-Coding RNA Search

Ss1.1-Pig2-45E16.5

Sequence:


               
               CACAATTTGCGCTGAAGTTTCTAGATCCGTCATTTGTGCCCTTTCCGCATTCTCTGACTC
ACGAACTCCAAGACAGACCTAAGTGGACATTTAATCGGACAGCGTTTTTACATCAAAGGC
AAGAAATTCTTCAGCATGTCGATGTAATAAAAAATTTTTCTTTGACCAAGAATAGTGTTC
GGATTGGACAACTGATGCACTATGATTATTCCAGCCATAAATATGTTTTCTCTATTAGCA
ATAATTTCCGATCACTGCTTCCAGACGTGTCACCCATTGTGAATAAGCATTATAATATTT
GTGCTGTGGTTGGAAATAGTGGGATCCTGACAGGGAGCCGGTGTGGACAACAAATAGATA
AATCAGATTTTGTTTTCCGTTGCAATTTCGCCCCTACGGAAGCTTTCCAAAGAGATGTTG
GAAGGAAAACCAACCTTACCACCTTCAACCCCAGCATCCTGGAAAAATATTACAACAATC
TTTTGACCATTCAGGACCGTAACAACTTTTTTCTCAGTTTAAAAAAGCTCGATGGGGCCA
TTCTTTGGATCCCTGCATTTTTCTTCCATACCTCAGCAACTGTTACCAGGACATTAGTTG
ACTTTTTTGTTGAACACAGAGGTCAGTTAAAGGTCCAATTGGCTTGGCCTGGAAATATAA
TGCAACATGTCAACAGGTACTGGAAAAACAAACATTTGTCACCCAAACGGCTGAGCACAG
GTATTCTTATGTACACCCTTGCATCAGCAATATGTGAAGAGATCCACTTGTATGGATTTT
GGCCTTTTGGATTTGATCCCAACACAAGGGAAGATCTTCCATACCATTACTATGACAAAA
AAGGAACCAAATTTACCACCAAGTGGCAGGAGTCCCACCAGCTGCCTGCTGAGTTTCAGC
TGCTATACCGAATGCACGGGGAAGGGCTCACCAAGCTGACTGTGTCTCGCTGTGCCTAAA
AACTCCGAACAGAAAGTGCCAAATGGCTGATTTAAAAGTGCCCCAAGTCACACTGAATAG
TCAGAATAGAACCCTAGAGAATTTCTTATAAGGACTGTCTGCCATTTAAAAGGAAAGGTG
TCTTTTCTCCCTTTTTTGCACTGCTCTTTGAAGGGTCTCAGCAGGACAGACGCTTTGAAG
CCACACGATTTTAAACTTGACTGATAAAGGGAACGTTGCATTTGGAACTATGCTGATAAT
GAAATGGTCTAAAGTATTTTCATGTTTGTATTTTAATAATAAACTGCCTCCCATTTTTTC
ATGAGGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAATTTGCGCTGAAGTTTCTAGATCCGTCATTTGTGCCCTTTCCGCATTCTCTGACTC
ACGAACTCCAAGACAGACCTAAGTGGACATTTAATCGGACAGCGTTTTTACATCAAAGGC
AAGAAATTCTTCAGCATGTCGATGTAATAAAAAATTTTTCTTTGACCAAGAATAGTGTTC
GGATTGGACAACTGATGCACTATGATTATTCCAGCCATAAATATGTTTTCTCTATTAGCA
ATAATTTCCGATCACTGCTTCCAGACGTGTCACCCATTGTGAATAAGCATTATAATATTT
GTGCTGTGGTTGGAAATAGTGGGATCCTGACAGGGAGCCGGTGTGGACAACAAATAGATA
AATCAGATTTTGTTTTCCGTTGCAATTTCGCCCCTACGGAAGCTTTCCAAAGAGATGTTG
GAAGGAAAACCAACCTTACCACCTTCAACCCCAGCATCCTGGAAAAATATTACAACAATC
TTTTGACCATTCAGGACCGTAACAACTTTTTTCTCAGTTTAAAAAAGCTCGATGGGGCCA
TTCTTTGGATCCCTGCATTTTTCTTCCATACCTCAGCAACTGTTACCAGGACATTAGTTG
ACTTTTTTGTTGAACACAGAGGTCAGTTAAAGGTCCAATTGGCTTGGCCTGGAAATATAA
TGCAACATGTCAACAGGTACTGGAAAAACAAACATTTGTCACCCAAACGGCTGAGCACAG
GTATTCTTATGTACACCCTTGCATCAGCAATATGTGAAGAGATCCACTTGTATGGATTTT
GGCCTTTTGGATTTGATCCCAACACAAGGGAAGATCTTCCATACCATTACTATGACAAAA
AAGGAACCAAATTTACCACCAAGTGGCAGGAGTCCCACCAGCTGCCTGCTGAGTTTCAGC
TGCTATACCGAATGCACGGGGAAGGGCTCACCAAGCTGACTGTGTCTCGCTGTGCCTAAA
AACTCCGAACAGAAAGTGCCAAATGGCTGATTTAAAAGTGCCCCAAGTCACACTGAATAG
TCAGAATAGAACCCTAGAGAATTTCTTATAAGGACTGTCTGCCATTTAAAAGGAAAGGTG
TCTTTTCTCCCTTTTTTGCACTGCTCTTTGAAGGGTCTCAGCAGGACAGACGCTTTGAAG
CCACACGATTTTAAACTTGACTGATAAAGGGAACGTTGCATTTGGAACTATGCTGATAAT
GAAATGGTCTAAAGTATTTTCATGTTTGTATTTTAATAATAAACTGCCTCCCATTTTTTC
ATGAGGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46517911|emb|CAG26898.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46517911|emb|CAG26898.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               366-525, - strand, RNAz p=0.770508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-525, - strand, RNAz p=0.770508

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               87-678, gnl|bosTau2|chr24 (43326111-43325524)
               

               
               87-678, gnl|Hg17|chr18 (53175114-53175701)
               

               
               87-678, gnl|Mm7|chr18 (64657810-64658398)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-678, gnl|bosTau2|chr24 (43326111-43325524)
               

               
               87-678, gnl|Hg17|chr18 (53175114-53175701)
               

               
               87-678, gnl|Mm7|chr18 (64657810-64658398)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               ebs (0.118301)

	87-678, gnl\|bosTau2\|chr24 (43326111-43325524)
	87-678, gnl\|Hg17\|chr18 (53175114-53175701)
	87-678, gnl\|Mm7\|chr18 (64657810-64658398)