Ss1.1-Pig2-45H07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCCTGCTATAAGGCTTCTTTGCCCAGAGCTCCAATTACATCTCCCCGTCATTGCACCT CAGGTGGACTGGGTTGGATATAATGCACTTCAGAACTGTTTGGGAAGCCCTGTTAATTTT TCATTAAGTGGATAATGGTGCTACATGTTTTAATGTCCATTCTGCAAGAGAGACAAATGT CTGAACCCTGCCACCCCTTCCCTCCTCAGTCAGGACTTCCTGGAGATAATCGCCCCAATT ACCACCGGCAAATGTCAGAACCTATTGTCCCTGCAGCTCCCCCACCCCCTCAGGGATTCA AACAAGAATACCATGACCCACTCTTTGAACATGGGGTCCCAGGCATGGCAGGCCCCTCAG CACATGCGTTCCAGTCACCAATGGGAATCAAGCAGGAGCCCCGGGATTACTGCGTTGATT CAGAAGTGCCTAATTGCCAGTCGTCTTACATGAGAGGGGGCTACTTCTCCAGCAGCCATG AAGGTTTTTCATATGAGAAAGACCCCCGATTGTACTTTGATGACACTTGTGTCGTTCCTG AAAGACTGGAAGGCAAAGTCAAACAAGAGCCCACCATGTATCGGGAGGGGCCCCCTTATC AGAGGCGAGGTTCCCTTCAGCTGTGGCAGTTCCTGGTCACCCTTCTCGATGACCCAGCCA ATGCCCACTTCATTGCCTGGACAGGCCGAGGCATGGAGTTCAAGCTGATCGAACCGGAGG AGGTTGCTCGGCGTTGGGGCATCCAGAAGAACCGGCCAGCCATGAACTACGACAAGCTCA GCCGATCTCTGCGCTATTACTATGAGAAGGGCATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCCTGCTATAAGGCTTCTTTGCCCAGAGCTCCAATTACATCTCCCCGTCATTGCACCT CAGGTGGACTGGGTTGGATATAATGCACTTCAGAACTGTTTGGGAAGCCCTGTTAATTTT TCATTAAGTGGATAATGGTGCTACATGTTTTAATGTCCATTCTGCAAGAGAGACAAATGT CTGAACCCTGCCACCCCTTCCCTCCTCAGTCAGGACTTCCTGGAGATAATCGCCCCAATT ACCACCGGCAAATGTCAGAACCTATTGTCCCTGCAGCTCCCCCACCCCCTCAGGGATTCA AACAAGAATACCATGACCCACTCTTTGAACATGGGGTCCCAGGCATGGCAGGCCCCTCAG CACATGCGTTCCAGTCACCAATGGGAATCAAGCAGGAGCCCCGGGATTACTGCGTTGATT CAGAAGTGCCTAATTGCCAGTCGTCTTACATGAGAGGGGGCTACTTCTCCAGCAGCCATG AAGGTTTTTCATATGAGAAAGACCCCCGATTGTACTTTGATGACACTTGTGTCGTTCCTG AAAGACTGGAAGGCAAAGTCAAACAAGAGCCCACCATGTATCGGGAGGGGCCCCCTTATC AGAGGCGAGGTTCCCTTCAGCTGTGGCAGTTCCTGGTCACCCTTCTCGATGACCCAGCCA ATGCCCACTTCATTGCCTGGACAGGCCGAGGCATGGAGTTCAAGCTGATCGAACCGGAGG AGGTTGCTCGGCGTTGGGGCATCCAGAAGAACCGGCCAGCCATGAACTACGACAAGCTCA GCCGATCTCTGCGCTATTACTATGAGAAGGGCATCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 169-408, - strand, RNAz p=0.62358 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 169-408, - strand, RNAz p=0.62358 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 3-168, gnl|bosTau2|chr1 (54533553-54533389) | |
| 3-168, gnl|canFam2|chr34 (21745334-21745531) | |
| 3-168, gnl|echTel1|scaffold_310397 (115588-115784) | |
| 3-168, gnl|hg17|chr3 (187253142-187253338) | |
| 3-168, gnl|Hg17|chr3 (187253349-187253184) | |
| 3-168, gnl|loxAfr1|scaffold_21412 (41362-41166) | |
| 3-168, gnl|mm7|chr16 (22037333-22037526) | |
| 3-168, gnl|Mm7|chr16 (22037540-22037373) | |
| 3-168, gnl|monDom2|scaffold_77 (330962-331146) | |
| 3-168, gnl|oryCun1|scaffold_204075 (166182-165986) | |
| 3-168, gnl|panTro1|chr2 (191295098-191295294) | |
| 3-168, gnl|rheMac2|chr2 (100577436-100577240) | |
| 3-168, gnl|rn3|chr11 (80956484-80956290) | |
| 169-433, gnl|bosTau2|chr1 (54545285-54545021) | |
| 169-433, gnl|canFam2|chr34 (21756069-21756356) | |
| 169-433, gnl|danRer3|chr9 (18333939-18333638) | |
| 169-433, gnl|dasNov1|scaffold_6751 (3053-2764) | |
| 169-433, gnl|echTel1|scaffold_310397 (134207-134493) | |
| 169-433, gnl|fr1|chrUn (201891751-201892096) | |
| 169-433, gnl|galGal2|chr9 (8497442-8497166) | |
| 169-433, gnl|hg17|chr3 (187266294-187266581) | |
| 169-433, gnl|Hg17|chr3 (187266558-187266294) | |
| 169-433, gnl|loxAfr1|scaffold_19939 (20537-20250) | |
| 169-433, gnl|mm7|chr16 (22051660-22051945) | |
| 169-433, gnl|Mm7|chr16 (22051924-22051660) | |
| 169-433, gnl|monDom2|scaffold_77 (344898-345160) | |
| 169-433, gnl|oryCun1|scaffold_204075 (154402-154112) | |
| 169-433, gnl|panTro1|chr2 (191308309-191308596) | |
| 169-433, gnl|rheMac2|chr2 (100564800-100564513) | |
| 169-433, gnl|rn3|chr11 (80943149-80942860) | |
| 169-433, gnl|tetNig1|chr2 (6761728-6761384) | |
| 169-433, gnl|xenTro1|scaffold_23 (3551358-3551085) | |
| 582-724, gnl|bosTau2|chr19 (38671678-38671820) | |
| 582-724, gnl|canFam2|chr9 (23047411-23047197) | |
| 582-724, gnl|danRer3|chr12 (26249234-26249438) | |
| 582-724, gnl|dasNov1|scaffold_16675 (11840-11630) | |
| 582-724, gnl|echTel1|scaffold_319332 (84484-84698) | |
| 582-724, gnl|fr1|chrUn (120635830-120636041) | |
| 582-724, gnl|galGal2|chr27 (2106329-2106555) | |
| 582-724, gnl|hg17|chr17 (38962388-38962601) | |
| 582-724, gnl|Hg17|chr17 (38962538-38962396) | |
| 582-724, gnl|loxAfr1|scaffold_36533 (14039-14253) | |
| 582-724, gnl|mm7|chr11 (101880359-101880566) | |
| 582-724, gnl|Mm7|chr11 (101880507-101880365) | |
| 582-724, gnl|monDom2|scaffold_18 (53905520-53905737) | |
| 582-724, gnl|oryCun1|scaffold_211843 (42257-42048) | |
| 582-724, gnl|panTro1|chr19 (42144991-42145204) | |
| 582-724, gnl|rheMac2|chr16 (53546314-53546527) | |
| 582-724, gnl|rn3|chr10 (90824358-90824565) | |
| 582-724, gnl|tetNig1|chrUn_random (100615913-100615726) | |
| 582-724, gnl|xenTro1|scaffold_23 (3561282-3561097) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-168, gnl|bosTau2|chr1 (54533553-54533389) | |
| 3-168, gnl|canFam2|chr34 (21745334-21745531) | |
| 3-168, gnl|echTel1|scaffold_310397 (115588-115784) | |
| 3-168, gnl|hg17|chr3 (187253142-187253338) | |
| 3-168, gnl|Hg17|chr3 (187253349-187253184) | |
| 3-168, gnl|loxAfr1|scaffold_21412 (41362-41166) | |
| 3-168, gnl|mm7|chr16 (22037333-22037526) | |
| 3-168, gnl|Mm7|chr16 (22037540-22037373) | |
| 3-168, gnl|monDom2|scaffold_77 (330962-331146) | |
| 3-168, gnl|oryCun1|scaffold_204075 (166182-165986) | |
| 3-168, gnl|panTro1|chr2 (191295098-191295294) | |
| 3-168, gnl|rheMac2|chr2 (100577436-100577240) | |
| 3-168, gnl|rn3|chr11 (80956484-80956290) | |
| 169-433, gnl|bosTau2|chr1 (54545285-54545021) | |
| 169-433, gnl|canFam2|chr34 (21756069-21756356) | |
| 169-433, gnl|danRer3|chr9 (18333939-18333638) | |
| 169-433, gnl|dasNov1|scaffold_6751 (3053-2764) | |
| 169-433, gnl|echTel1|scaffold_310397 (134207-134493) | |
| 169-433, gnl|fr1|chrUn (201891751-201892096) | |
| 169-433, gnl|galGal2|chr9 (8497442-8497166) | |
| 169-433, gnl|hg17|chr3 (187266294-187266581) | |
| 169-433, gnl|Hg17|chr3 (187266558-187266294) | |
| 169-433, gnl|loxAfr1|scaffold_19939 (20537-20250) | |
| 169-433, gnl|mm7|chr16 (22051660-22051945) | |
| 169-433, gnl|Mm7|chr16 (22051924-22051660) | |
| 169-433, gnl|monDom2|scaffold_77 (344898-345160) | |
| 169-433, gnl|oryCun1|scaffold_204075 (154402-154112) | |
| 169-433, gnl|panTro1|chr2 (191308309-191308596) | |
| 169-433, gnl|rheMac2|chr2 (100564800-100564513) | |
| 169-433, gnl|rn3|chr11 (80943149-80942860) | |
| 169-433, gnl|tetNig1|chr2 (6761728-6761384) | |
| 169-433, gnl|xenTro1|scaffold_23 (3551358-3551085) | |
| 582-724, gnl|bosTau2|chr19 (38671678-38671820) | |
| 582-724, gnl|canFam2|chr9 (23047411-23047197) | |
| 582-724, gnl|danRer3|chr12 (26249234-26249438) | |
| 582-724, gnl|dasNov1|scaffold_16675 (11840-11630) | |
| 582-724, gnl|echTel1|scaffold_319332 (84484-84698) | |
| 582-724, gnl|fr1|chrUn (120635830-120636041) | |
| 582-724, gnl|galGal2|chr27 (2106329-2106555) | |
| 582-724, gnl|hg17|chr17 (38962388-38962601) | |
| 582-724, gnl|Hg17|chr17 (38962538-38962396) | |
| 582-724, gnl|loxAfr1|scaffold_36533 (14039-14253) | |
| 582-724, gnl|mm7|chr11 (101880359-101880566) | |
| 582-724, gnl|Mm7|chr11 (101880507-101880365) | |
| 582-724, gnl|monDom2|scaffold_18 (53905520-53905737) | |
| 582-724, gnl|oryCun1|scaffold_211843 (42257-42048) | |
| 582-724, gnl|panTro1|chr19 (42144991-42145204) | |
| 582-724, gnl|rheMac2|chr16 (53546314-53546527) | |
| 582-724, gnl|rn3|chr10 (90824358-90824565) | |
| 582-724, gnl|tetNig1|chrUn_random (100615913-100615726) | |
| 582-724, gnl|xenTro1|scaffold_23 (3561282-3561097) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |