Ss1.1-Pig2-45H23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCACCAAGTCCTTTGCCGTCAAGATTCTGGACGAGAATGACAACCCGCCTCGTTTCAC CAAGGGACTCTATGTGCTGCAGGTTCATGAGAACAACATCCCTGGAGAGTACTTGGGCTC TGTGCTCGCCCAGGACCCCGACCTGGGCCAAAATGGCACGGTGTCCTATTCAATCTTGCC CTCACACATCGGCGACGTGTCCATCTACACGTATGTGTCTGTGAACCCCACAAACGGGGC CATCTACGCCCTGCGCTCCTTTAACTACGAACAGACCAAGGCTTTCGAGTTCAAGGTGCT TGCTAAGGACTCTGGGGCGCCCGCACACTTGGAGAGCAACGCCACTGTGAGGGTGACAGT ACTGGACGTGAATGACAACGCTCCGGTGATCGTGCTGCCTACGCTGCAGAACGACACCGC TGAGCTGCAGGTGCCACGCAACGCAGGGCTGGGCTACCTGGTAAGCACTGTACGCGCACT TGACAGCGACTTTGGCGAGAGCGGGCGCCTCACATATGAGATCGTAGACGGTAATGACGA CCACCTGTTTGAAATCGATCCATCCAGCGGCGAGATTCGCACGCTGCACCCTTTCTGGGA GGACGTGACACCGGTGGTAGAGCTGGTAGTGAAGGTGACGGACCACGGCAAGCCCACCCT GTCTGCGGTGGCCAAGCTCATCATCCGCTCGGTGAGCGGCTCCTTGCCCGAGGGGGTCCC CCGGGTGAATGGCGAACAGCACCACTGGGACATGTCTCTGCCGCTTATCGTGACTCTGAG CACTATCTCCATCATCCTCCTAGCGGCCATGATCACCATCGCCGTCAAGTGCAAGCGCGA GAACAAGGAGATCCGCACTTACAACTGCCGCATCGCCGAGTACAGCCACCCGCAGCTGGG CGGGGGAAAGGGCAAGAAGAAGAAGATCAACAAAAATGATATCATGCTGGTGCAGAGCGA GGTGGAGGAGAGGAACGCCATGAACGTCATGAACGTGGTGAGCAGCCCCTCCCTGGCTAC CTCCCCCATGTACTTCGACTACCAGACCCGCCTGCCCCTGAGCTCACCTCGGTCGGAGGT GATGTATCTCAAACCGGCCTCCAACAACCTGACTGTCCCTCAGGGTCATGCTGGCTGCCA CACCAGCTTCACCGGACAAGGGACTAATGCGAGCGAGACCCCAGCCACTCGGATGTCCAT AATTCAGACAGACAATTTTCCCGCAGAGCCCAATTACATGGGCAGCAGGCAGCAGTTTGT TCAAAGTAGCTCCACGTTTAAGGACCCAGAAAGAGCCAGCCTGAGAGACAGTGGGCACGG GGACAGTGATCAGGCTGACAGTGACCAAGACACTAACAAAGGCTCCTGCTGTGACATGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCACCAAGTCCTTTGCCGTCAAGATTCTGGACGAGAATGACAACCCGCCTCGTTTCAC CAAGGGACTCTATGTGCTGCAGGTTCATGAGAACAACATCCCTGGAGAGTACTTGGGCTC TGTGCTCGCCCAGGACCCCGACCTGGGCCAAAATGGCACGGTGTCCTATTCAATCTTGCC CTCACACATCGGCGACGTGTCCATCTACACGTATGTGTCTGTGAACCCCACAAACGGGGC CATCTACGCCCTGCGCTCCTTTAACTACGAACAGACCAAGGCTTTCGAGTTCAAGGTGCT TGCTAAGGACTCTGGGGCGCCCGCACACTTGGAGAGCAACGCCACTGTGAGGGTGACAGT ACTGGACGTGAATGACAACGCTCCGGTGATCGTGCTGCCTACGCTGCAGAACGACACCGC TGAGCTGCAGGTGCCACGCAACGCAGGGCTGGGCTACCTGGTAAGCACTGTACGCGCACT TGACAGCGACTTTGGCGAGAGCGGGCGCCTCACATATGAGATCGTAGACGGTAATGACGA CCACCTGTTTGAAATCGATCCATCCAGCGGCGAGATTCGCACGCTGCACCCTTTCTGGGA GGACGTGACACCGGTGGTAGAGCTGGTAGTGAAGGTGACGGACCACGGCAAGCCCACCCT GTCTGCGGTGGCCAAGCTCATCATCCGCTCGGTGAGCGGCTCCTTGCCCGAGGGGGTCCC CCGGGTGAATGGCGAACAGCACCACTGGGACATGTCTCTGCCGCTTATCGTGACTCTGAG CACTATCTCCATCATCCTCCTAGCGGCCATGATCACCATCGCCGTCAAGTGCAAGCGCGA GAACAAGGAGATCCGCACTTACAACTGCCGCATCGCCGAGTACAGCCACCCGCAGCTGGG CGGGGGAAAGGGCAAGAAGAAGAAGATCAACAAAAATGATATCATGCTGGTGCAGAGCGA GGTGGAGGAGAGGAACGCCATGAACGTCATGAACGTGGTGAGCAGCCCCTCCCTGGCTAC CTCCCCCATGTACTTCGACTACCAGACCCGCCTGCCCCTGAGCTCACCTCGGTCGGAGGT GATGTATCTCAAACCGGCCTCCAACAACCTGACTGTCCCTCAGGGTCATGCTGGCTGCCA CACCAGCTTCACCGGACAAGGGACTAATGCGAGCGAGACCCCAGCCACTCGGATGTCCAT AATTCAGACAGACAATTTTCCCGCAGAGCCCAATTACATGGGCAGCAGGCAGCAGTTTGT TCAAAGTAGCTCCACGTTTAAGGACCCAGAAAGAGCCAGCCTGAGAGACAGTGGGCACGG GGACAGTGATCAGGCTGACAGTGACCAAGACACTAACAAAGGCTCCTGCTGTGACATGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 120-239, - strand, RNAz p=0.62222 | |
| 678-797, - strand, RNAz p=0.513934 | |
| 918-1037, - strand, RNAz p=0.713674 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-239, - strand, RNAz p=0.62222 | |
| 678-797, - strand, RNAz p=0.513934 | |
| 918-1037, - strand, RNAz p=0.713674 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-1219, gnl|bosTau2|chr12 (776199-777420) | |
| 1-1219, gnl|Hg17|chr13 (57106040-57107259) | |
| 1-1219, gnl|Mm7|chr14 (79123801-79125020) | |
| 1265-1380, gnl|bosTau2|chr12 (811381-811496) | |
| 1265-1380, gnl|canFam2|chr22 (16843445-16843665) | |
| 1265-1380, gnl|danRer3|chr14 (50178507-50178722) | |
| 1265-1380, gnl|dasNov1|scaffold_10142 (45476-45296) | |
| 1265-1380, gnl|echTel1|scaffold_320219 (39381-39557) | |
| 1265-1380, gnl|fr1|chrUn (75695202-75695404) | |
| 1265-1380, gnl|galGal2|chr1 (155695547-155695346) | |
| 1265-1380, gnl|hg17|chr13 (57138764-57138984) | |
| 1265-1380, gnl|Hg17|chr13 (57138794-57138909) | |
| 1265-1380, gnl|loxAfr1|scaffold_2020 (100772-100992) | |
| 1265-1380, gnl|mm7|chr14 (79153838-79154058) | |
| 1265-1380, gnl|Mm7|chr14 (79153868-79153983) | |
| 1265-1380, gnl|monDom2|scaffold_47 (10270111-10269893) | |
| 1265-1380, gnl|oryCun1|scaffold_214996 (94564-94344) | |
| 1265-1380, gnl|panTro1|chr14_random (30121852-30121632) | |
| 1265-1380, gnl|rheMac2|chr17 (36685023-36685243) | |
| 1265-1380, gnl|rn3|chr15 (66440647-66440867) | |
| 1265-1380, gnl|tetNig1|chr2 (10495816-10496036) | |
| 1265-1380, gnl|xenTro1|scaffold_515 (221587-221803) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1219, gnl|bosTau2|chr12 (776199-777420) | |
| 1-1219, gnl|Hg17|chr13 (57106040-57107259) | |
| 1-1219, gnl|Mm7|chr14 (79123801-79125020) | |
| 1265-1380, gnl|bosTau2|chr12 (811381-811496) | |
| 1265-1380, gnl|canFam2|chr22 (16843445-16843665) | |
| 1265-1380, gnl|danRer3|chr14 (50178507-50178722) | |
| 1265-1380, gnl|dasNov1|scaffold_10142 (45476-45296) | |
| 1265-1380, gnl|echTel1|scaffold_320219 (39381-39557) | |
| 1265-1380, gnl|fr1|chrUn (75695202-75695404) | |
| 1265-1380, gnl|galGal2|chr1 (155695547-155695346) | |
| 1265-1380, gnl|hg17|chr13 (57138764-57138984) | |
| 1265-1380, gnl|Hg17|chr13 (57138794-57138909) | |
| 1265-1380, gnl|loxAfr1|scaffold_2020 (100772-100992) | |
| 1265-1380, gnl|mm7|chr14 (79153838-79154058) | |
| 1265-1380, gnl|Mm7|chr14 (79153868-79153983) | |
| 1265-1380, gnl|monDom2|scaffold_47 (10270111-10269893) | |
| 1265-1380, gnl|oryCun1|scaffold_214996 (94564-94344) | |
| 1265-1380, gnl|panTro1|chr14_random (30121852-30121632) | |
| 1265-1380, gnl|rheMac2|chr17 (36685023-36685243) | |
| 1265-1380, gnl|rn3|chr15 (66440647-66440867) | |
| 1265-1380, gnl|tetNig1|chr2 (10495816-10496036) | |
| 1265-1380, gnl|xenTro1|scaffold_515 (221587-221803) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |