Non-Coding RNA Search

Ss1.1-Pig2-45J11.5.5

Sequence:


               
               GGCCCTGGTGGGGGTGGTGGCCGTGGCCGGAAGCTGCTGCTGCCCACGCCCCTGCTGAGG
GACCTCTATACCCTTAGTGGACTCTACCCCTCCCCCTTCCACCGGGACAACTTCAGCCCT
TACCTCTTTGCAAGCCGTGACCACCTGCTGTGAGGCCCAACACCCACCCAGAATCTGCCC
AGTCCCCATTTCTTCCCTGCCACGCGTGTGTGTGCGTGTGCTGTGAGTGCCAAAGCCCCT
GTCCCCAAACCAGCCAGGCCTAGACATCAGAGGATGGCTGGAAGGACACCTGGGCAACCC
CCCTCCCTGCCTCTCTTGCCCTCTGGGACATCCAAGTGTGCATAATTGGGAAGTGGGGCC
TTGCCTCGTTGGATCACCCTTTTAAGGGCCAAAGCCTGACCCCACTACTGGTCATTGCCC
AGGCAATGGGAGCCCCCACAGTTCTCAGAATTCTAGCCAAAAGGAGTTTACTCCAGCCAA
TATGAGCCTCCCTATCACTTCTTAGAAGCCTCAGGCAAGAGGGCAACTCTAGTTAGTGTT
CAGAGTCTGAACAACCAATAGGAGTCCTTGGTTCTCAGAATTTCTAGGGTGGGTGGGTAT
GATTCCAGTCAATGGGGGACCGCCCATATCTAAGCAGGTGCAAAGCAGAGGAGGGAGATG
GGGTCATCTTTTGTCACTGAGTCCTCTCTCCTCAGAATCAGAGGGTCCAGCTGGAGGGTG
GGGGGCAGGTTCCCCCATGGCAGGGTCCTTGGGGTACCCCTTCCTCTCTCAGCCCCTCCC
CCATGTGCAATCTCTCACCCAGCCCATCCTAACTCCCTACTTATGCAGGGCTTGCCCCAG
TTCAGAAGTTTTGGGGTTCAGGGTGCTGTGTCCCCTCTTGCCTGTGTCCAGGTCACCCCA
AACCCTTCTGTTATTTATTAGGGCTGTTGGAGAGGAGTTTTTTTTTTTTCCTTAGAACCC
AAGCCCTGTTCTTTGCACTGCCCCCCATGCCTCAGACTTACACAGATGTGCCATCATAGG
GGCATGCGTGAAGCAGAGAGGGCTCCCCACTCCAGGCAGCCAAAGGCAGTGGGCAGGGGA
AACACTGCCCCCCCTTTCCTGCCCCCTCCTCATCTTTAATAAAAACCTGTTTGTAACAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCTGGTGGGGGTGGTGGCCGTGGCCGGAAGCTGCTGCTGCCCACGCCCCTGCTGAGG
GACCTCTATACCCTTAGTGGACTCTACCCCTCCCCCTTCCACCGGGACAACTTCAGCCCT
TACCTCTTTGCAAGCCGTGACCACCTGCTGTGAGGCCCAACACCCACCCAGAATCTGCCC
AGTCCCCATTTCTTCCCTGCCACGCGTGTGTGTGCGTGTGCTGTGAGTGCCAAAGCCCCT
GTCCCCAAACCAGCCAGGCCTAGACATCAGAGGATGGCTGGAAGGACACCTGGGCAACCC
CCCTCCCTGCCTCTCTTGCCCTCTGGGACATCCAAGTGTGCATAATTGGGAAGTGGGGCC
TTGCCTCGTTGGATCACCCTTTTAAGGGCCAAAGCCTGACCCCACTACTGGTCATTGCCC
AGGCAATGGGAGCCCCCACAGTTCTCAGAATTCTAGCCAAAAGGAGTTTACTCCAGCCAA
TATGAGCCTCCCTATCACTTCTTAGAAGCCTCAGGCAAGAGGGCAACTCTAGTTAGTGTT
CAGAGTCTGAACAACCAATAGGAGTCCTTGGTTCTCAGAATTTCTAGGGTGGGTGGGTAT
GATTCCAGTCAATGGGGGACCGCCCATATCTAAGCAGGTGCAAAGCAGAGGAGGGAGATG
GGGTCATCTTTTGTCACTGAGTCCTCTCTCCTCAGAATCAGAGGGTCCAGCTGGAGGGTG
GGGGGCAGGTTCCCCCATGGCAGGGTCCTTGGGGTACCCCTTCCTCTCTCAGCCCCTCCC
CCATGTGCAATCTCTCACCCAGCCCATCCTAACTCCCTACTTATGCAGGGCTTGCCCCAG
TTCAGAAGTTTTGGGGTTCAGGGTGCTGTGTCCCCTCTTGCCTGTGTCCAGGTCACCCCA
AACCCTTCTGTTATTTATTAGGGCTGTTGGAGAGGAGTTTTTTTTTTTTCCTTAGAACCC
AAGCCCTGTTCTTTGCACTGCCCCCCATGCCTCAGACTTACACAGATGTGCCATCATAGG
GGCATGCGTGAAGCAGAGAGGGCTCCCCACTCCAGGCAGCCAAAGGCAGTGGGCAGGGGA
AACACTGCCCCCCCTTTCCTGCCCCCTCCTCATCTTTAATAAAAACCTGTTTGTAACAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               384-541, - strand, RNAz p=0.976966
               

               
               731-909, - strand, RNAz p=0.984077
               

               
               950-1141, - strand, RNAz p=0.904958

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-541, - strand, RNAz p=0.976966
               

               
               731-909, - strand, RNAz p=0.984077
               

               
               950-1141, - strand, RNAz p=0.904958

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1069-1177, - strand, RNAmicro p=0.92092

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1069-1177, - strand, RNAmicro p=0.92092

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-650, gnl|bosTau2|chr7 (11222598-11223236)
               

               
               1-650, gnl|Hg17|chr19 (11336214-11336856)
               

               
               1-650, gnl|Mm7|chr9 (21826193-21826837)
               


               
               679-1141, gnl|bosTau2|chr7 (11223236-11223702)
               

               
               679-1141, gnl|Hg17|chr19 (11336856-11337374)
               

               
               679-1141, gnl|Mm7|chr9 (21826837-21827305)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-650, gnl|bosTau2|chr7 (11222598-11223236)
               

               
               1-650, gnl|Hg17|chr19 (11336214-11336856)
               

               
               1-650, gnl|Mm7|chr9 (21826193-21826837)
               


               
               679-1141, gnl|bosTau2|chr7 (11223236-11223702)
               

               
               679-1141, gnl|Hg17|chr19 (11336856-11337374)
               

               
               679-1141, gnl|Mm7|chr9 (21826837-21827305)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ecc (0.46014)
               

               
               cbl (0.344392)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.46014)
               

               
               cbl (0.344392)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)

	384-541, - strand, RNAz p=0.976966
	731-909, - strand, RNAz p=0.984077
	950-1141, - strand, RNAz p=0.904958

	1-650, gnl\|bosTau2\|chr7 (11222598-11223236)
	1-650, gnl\|Hg17\|chr19 (11336214-11336856)
	1-650, gnl\|Mm7\|chr9 (21826193-21826837)

	679-1141, gnl\|bosTau2\|chr7 (11223236-11223702)
	679-1141, gnl\|Hg17\|chr19 (11336856-11337374)
	679-1141, gnl\|Mm7\|chr9 (21826837-21827305)