Non-Coding RNA Search

Ss1.1-Pig2-45K04.5

Sequence:


               
               CGGGTTCAGGACACTCCCCACCCTGGCCCATCCTCACATCCCCTTTGGCCCTTCCAGGTC
CCGGGCCTCCTCTGAGAGTGAGTTGGATGCCGAAGGCCCTGGTGGTGGTGATGGGGACCC
AGGCCTGTTTCCCTTCCCCCTGCCCCGGGGGGGGGCCCAGGCCTCCAGTGAGGAGAGCGA
GGAGGAGGGCACATCTGACGACCTCCGCCTCCCCACTGACTGCCACTATGCAAGCCGGCC
CCCTCGGCCACAGGCGTTCTGCACCTTTGGAAGCCGGCTGGTGAGTCCTGGATGCTACGT
GTTCAGCCGCCGGCTGGACCGGTTCTGCTCAGCACTGAGCTCCATGCTGGAGCGGCATCT
CAGCTCACACATGTGGAAGAAGATCCCCCCCGCGGCTGAGCCTCCATCCCACCTTGTCAG
CTCCCCTCCGGCTGCTCCCCTGAGCCCATCCTCTGCGAGCAGCTGCCCCCGGCTTCCAGG
CCCACCCCCTAGACCCGCCTGCCCAGCCTCCATGCCCCCTGCCAAGGACAGCCTAGTTCC
CAGCTACCCTGCAGGCTCCCCCAGTGTGGCAGCCGCCTGCAGCCAGGCGGAATGCATGGG
CGGAAGCCAGGCTATCACCTCACCACTGCCTGCCAACACGCCGTCCCCGTCCTTCTGCAA
GCTCCCGCCTTCCAAGGCCAGCAAGTCGTCCAAAGGCAAGGACGCACTTGAGGTGGAGGC
TCCTTCTCGAAAGCGGAAGTTATCCCCTGGCCCCACCACTTTCAAACGGACCTGCATCCT
GGAGCCCACTGGAAAAGGCAAACCCCCTGGCTGCCGGGGCCTCTCGGCCAAGACTAAGAC
CGCTCTGGGCGTGGGGCTCAATGGGACGGTGGGGCCAAGAGTGAAGCGAGCAGGGCCCCT
GGACTGCCGGGGCCCCCCTCATCCGCCCCCTACGCCGGTCAAGGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGTTCAGGACACTCCCCACCCTGGCCCATCCTCACATCCCCTTTGGCCCTTCCAGGTC
CCGGGCCTCCTCTGAGAGTGAGTTGGATGCCGAAGGCCCTGGTGGTGGTGATGGGGACCC
AGGCCTGTTTCCCTTCCCCCTGCCCCGGGGGGGGGCCCAGGCCTCCAGTGAGGAGAGCGA
GGAGGAGGGCACATCTGACGACCTCCGCCTCCCCACTGACTGCCACTATGCAAGCCGGCC
CCCTCGGCCACAGGCGTTCTGCACCTTTGGAAGCCGGCTGGTGAGTCCTGGATGCTACGT
GTTCAGCCGCCGGCTGGACCGGTTCTGCTCAGCACTGAGCTCCATGCTGGAGCGGCATCT
CAGCTCACACATGTGGAAGAAGATCCCCCCCGCGGCTGAGCCTCCATCCCACCTTGTCAG
CTCCCCTCCGGCTGCTCCCCTGAGCCCATCCTCTGCGAGCAGCTGCCCCCGGCTTCCAGG
CCCACCCCCTAGACCCGCCTGCCCAGCCTCCATGCCCCCTGCCAAGGACAGCCTAGTTCC
CAGCTACCCTGCAGGCTCCCCCAGTGTGGCAGCCGCCTGCAGCCAGGCGGAATGCATGGG
CGGAAGCCAGGCTATCACCTCACCACTGCCTGCCAACACGCCGTCCCCGTCCTTCTGCAA
GCTCCCGCCTTCCAAGGCCAGCAAGTCGTCCAAAGGCAAGGACGCACTTGAGGTGGAGGC
TCCTTCTCGAAAGCGGAAGTTATCCCCTGGCCCCACCACTTTCAAACGGACCTGCATCCT
GGAGCCCACTGGAAAAGGCAAACCCCCTGGCTGCCGGGGCCTCTCGGCCAAGACTAAGAC
CGCTCTGGGCGTGGGGCTCAATGGGACGGTGGGGCCAAGAGTGAAGCGAGCAGGGCCCCT
GGACTGCCGGGGCCCCCCTCATCCGCCCCCTACGCCGGTCAAGGCTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56206277|emb|CAI22938.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56206277|emb|CAI22938.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               72-231, + strand, RNAz p=0.951295
               

               
               418-617, - strand, RNAz p=0.992452
               

               
               419-618, - strand, RNAz p=0.846448

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-231, + strand, RNAz p=0.951295
               

               
               418-617, - strand, RNAz p=0.992452
               

               
               419-618, - strand, RNAz p=0.846448

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC036849, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC036849, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               33-265, gnl|bosTau2|chr3 (25972017-25971788)
               

               
               33-265, gnl|Hg17|chr1 (109744569-109744801)
               

               
               33-265, gnl|Mm7|chr3 (108023226-108022990)
               


               
               379-948, gnl|bosTau2|chr3 (25971065-25970496)
               

               
               379-948, gnl|canFam2|chr6 (45428030-45427317)
               

               
               379-948, gnl|dasNov1|scaffold_118923 (3781-3099)
               

               
               379-948, gnl|echTel1|scaffold_277841 (2401-3114)
               

               
               379-948, gnl|hg17|chr1 (109745587-109746300)
               

               
               379-948, gnl|Hg17|chr1 (109745586-109746155)
               

               
               379-948, gnl|mm7|chr3 (108022332-108021619)
               

               
               379-948, gnl|Mm7|chr3 (108022331-108021762)
               

               
               379-948, gnl|monDom2|scaffold_0 (7158912-7158202)
               

               
               379-948, gnl|oryCun1|scaffold_208853 (28215-28928)
               

               
               379-948, gnl|panTro1|chr1 (108675836-108676549)
               

               
               379-948, gnl|rheMac2|chr1 (112550122-112550835)
               

               
               379-948, gnl|rn3|chr2 (203732254-203731541)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-265, gnl|bosTau2|chr3 (25972017-25971788)
               

               
               33-265, gnl|Hg17|chr1 (109744569-109744801)
               

               
               33-265, gnl|Mm7|chr3 (108023226-108022990)
               


               
               379-948, gnl|bosTau2|chr3 (25971065-25970496)
               

               
               379-948, gnl|canFam2|chr6 (45428030-45427317)
               

               
               379-948, gnl|dasNov1|scaffold_118923 (3781-3099)
               

               
               379-948, gnl|echTel1|scaffold_277841 (2401-3114)
               

               
               379-948, gnl|hg17|chr1 (109745587-109746300)
               

               
               379-948, gnl|Hg17|chr1 (109745586-109746155)
               

               
               379-948, gnl|mm7|chr3 (108022332-108021619)
               

               
               379-948, gnl|Mm7|chr3 (108022331-108021762)
               

               
               379-948, gnl|monDom2|scaffold_0 (7158912-7158202)
               

               
               379-948, gnl|oryCun1|scaffold_208853 (28215-28928)
               

               
               379-948, gnl|panTro1|chr1 (108675836-108676549)
               

               
               379-948, gnl|rheMac2|chr1 (112550122-112550835)
               

               
               379-948, gnl|rn3|chr2 (203732254-203731541)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               med (0.116252)

	72-231, + strand, RNAz p=0.951295
	418-617, - strand, RNAz p=0.992452
	419-618, - strand, RNAz p=0.846448

	33-265, gnl\|bosTau2\|chr3 (25972017-25971788)
	33-265, gnl\|Hg17\|chr1 (109744569-109744801)
	33-265, gnl\|Mm7\|chr3 (108023226-108022990)

	379-948, gnl\|bosTau2\|chr3 (25971065-25970496)
	379-948, gnl\|canFam2\|chr6 (45428030-45427317)
	379-948, gnl\|dasNov1\|scaffold_118923 (3781-3099)
	379-948, gnl\|echTel1\|scaffold_277841 (2401-3114)
	379-948, gnl\|hg17\|chr1 (109745587-109746300)
	379-948, gnl\|Hg17\|chr1 (109745586-109746155)
	379-948, gnl\|mm7\|chr3 (108022332-108021619)
	379-948, gnl\|Mm7\|chr3 (108022331-108021762)
	379-948, gnl\|monDom2\|scaffold_0 (7158912-7158202)
	379-948, gnl\|oryCun1\|scaffold_208853 (28215-28928)
	379-948, gnl\|panTro1\|chr1 (108675836-108676549)
	379-948, gnl\|rheMac2\|chr1 (112550122-112550835)
	379-948, gnl\|rn3\|chr2 (203732254-203731541)