Ss1.1-Pig2-45K07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCTTTGTTATTATGGCTTTGATTTCTGTGCCATGGATGCTTCTGATTAAGCCATTTAT TCTTAGAGCCAATCATCTGAAATCACAGATGCAGGCCTCCAGGATCCAAGAAGAGGCCAC CGAGGACATCGAAGCTGTCAACTCCAGCGCTTCCGTGAGCTCTGGGCGGAGGGCTTCTGC AGGTGCCCATGGGGCTCACGATGACCATGAAGAGGAGTTCCACTTTGGAGACATCTTTGT GCATCAAGCCATCCACACGATCGAGTACTGCCTGGGCTGCATTTCGAACACAGCCTCCTA CCTCCGGCTCTGGGCCCTCAGCCTGGCACATGCGCAACTGTCTGAGGTGCTCTGGACCAT GGTCATGACCATCGGCCTTCGAGTGCAAGGCTGGGGAGGGCTCGTCGGCGTGTTCATCAT TTTTGCCGTATTTGCTGTTCTGACGGTAGCCATCCTTCTGATCATGGAGGGCCTCTCCGC TTTCCTGCACGCCCTGCGGCTGCACTGGGTGGAGTTCCAGAATAAGTTCTACGTGGGAGC TGGTTACAAGTTTGCTCCATTCTCCTTTAAACAAATCCTGGATGGGACGGCCGAGGACTA GCGTCAGGTCCAGGGGCTGCAGCCACCTCCTGTATTGGTCACCTCCTCCACCAGCCACTC CCTCCATGGGTCACCTCTTGTGCCAGCCTCTGTGCCAGTGAAAGACGTTAGTCTTGTTTT AAACGTCAGCCTGTGCCAGGCAGTCAATGGCATGATTGTGCTCAGCTAACTGGACGCAGG ACCTCAGGTATTATATCTATAAGCCGTGGGATTTGATATGATTTAACCATGTCACAGAGA CGCTACCTAGGCAAGTCATTTCAGCCTCGCGTGGGGTCTTCACTGTCGAATGGGAAAATG ATTGCGGAGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCTTTGTTATTATGGCTTTGATTTCTGTGCCATGGATGCTTCTGATTAAGCCATTTAT TCTTAGAGCCAATCATCTGAAATCACAGATGCAGGCCTCCAGGATCCAAGAAGAGGCCAC CGAGGACATCGAAGCTGTCAACTCCAGCGCTTCCGTGAGCTCTGGGCGGAGGGCTTCTGC AGGTGCCCATGGGGCTCACGATGACCATGAAGAGGAGTTCCACTTTGGAGACATCTTTGT GCATCAAGCCATCCACACGATCGAGTACTGCCTGGGCTGCATTTCGAACACAGCCTCCTA CCTCCGGCTCTGGGCCCTCAGCCTGGCACATGCGCAACTGTCTGAGGTGCTCTGGACCAT GGTCATGACCATCGGCCTTCGAGTGCAAGGCTGGGGAGGGCTCGTCGGCGTGTTCATCAT TTTTGCCGTATTTGCTGTTCTGACGGTAGCCATCCTTCTGATCATGGAGGGCCTCTCCGC TTTCCTGCACGCCCTGCGGCTGCACTGGGTGGAGTTCCAGAATAAGTTCTACGTGGGAGC TGGTTACAAGTTTGCTCCATTCTCCTTTAAACAAATCCTGGATGGGACGGCCGAGGACTA GCGTCAGGTCCAGGGGCTGCAGCCACCTCCTGTATTGGTCACCTCCTCCACCAGCCACTC CCTCCATGGGTCACCTCTTGTGCCAGCCTCTGTGCCAGTGAAAGACGTTAGTCTTGTTTT AAACGTCAGCCTGTGCCAGGCAGTCAATGGCATGATTGTGCTCAGCTAACTGGACGCAGG ACCTCAGGTATTATATCTATAAGCCGTGGGATTTGATATGATTTAACCATGTCACAGAGA CGCTACCTAGGCAAGTCATTTCAGCCTCGCGTGGGGTCTTCACTGTCGAATGGGAAAATG ATTGCGGAGTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 216-333, gnl|bosTau2|chr19 (38856005-38855888) | |
| 216-333, gnl|canFam2|chr9 (23747618-23747457) | |
| 216-333, gnl|danRer3|chr24 (5332326-5332178) | |
| 216-333, gnl|dasNov1|scaffold_64993 (1045-1208) | |
| 216-333, gnl|echTel1|scaffold_103625 (5898-5722) | |
| 216-333, gnl|fr1|chrUn (208871620-208871457) | |
| 216-333, gnl|galGal2|chr27_random (223999-223849) | |
| 216-333, gnl|hg17|chr17 (37919376-37919540) | |
| 216-333, gnl|Hg17|chr17 (37919403-37919520) | |
| 216-333, gnl|loxAfr1|scaffold_19184 (3917-3753) | |
| 216-333, gnl|mm7|chr11 (101164035-101164196) | |
| 216-333, gnl|Mm7|chr11 (101164063-101164180) | |
| 216-333, gnl|monDom2|scaffold_18 (52961349-52961512) | |
| 216-333, gnl|oryCun1|scaffold_118183 (1190-1033) | |
| 216-333, gnl|panTro1|chr19 (41121932-41122096) | |
| 216-333, gnl|rheMac2|chr16 (52642632-52642796) | |
| 216-333, gnl|rn3|chr10 (90078687-90078848) | |
| 216-333, gnl|tetNig1|chr3 (12578393-12578256) | |
| 216-333, gnl|xenTro1|scaffold_1084 (73814-73665) | |
| 339-508, gnl|bosTau2|chr19 (38855588-38855419) | |
| 339-508, gnl|canFam2|chr9 (23747203-23746999) | |
| 339-508, gnl|danRer3|chr24 (5330367-5330175) | |
| 339-508, gnl|dasNov1|scaffold_23588 (10467-10651) | |
| 339-508, gnl|echTel1|scaffold_103625 (5454-5235) | |
| 339-508, gnl|fr1|chrUn (208871399-208871206) | |
| 339-508, gnl|galGal2|chr27_random (223423-223200) | |
| 339-508, gnl|hg17|chr17 (37919819-37920036) | |
| 339-508, gnl|Hg17|chr17 (37919836-37920005) | |
| 339-508, gnl|loxAfr1|scaffold_19184 (3477-3272) | |
| 339-508, gnl|mm7|chr11 (101164459-101164671) | |
| 339-508, gnl|Mm7|chr11 (101164476-101164645) | |
| 339-508, gnl|monDom2|scaffold_18 (52961859-52962070) | |
| 339-508, gnl|oryCun1|scaffold_118183 (850-637) | |
| 339-508, gnl|panTro1|chr9_random (32535000-32534815) | |
| 339-508, gnl|rheMac2|chr16 (52643072-52643289) | |
| 339-508, gnl|rn3|chr10 (90079124-90079336) | |
| 339-508, gnl|tetNig1|chr3 (12578190-12578000) | |
| 339-508, gnl|xenTro1|scaffold_1084 (72649-72458) | |
| 669-863, gnl|bosTau2|chr4 (60204315-60204511) | |
| 669-863, gnl|Hg17|chr7 (137848612-137848420) | |
| 669-863, gnl|Mm7|chr6 (37979911-37979728) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 216-333, gnl|bosTau2|chr19 (38856005-38855888) | |
| 216-333, gnl|canFam2|chr9 (23747618-23747457) | |
| 216-333, gnl|danRer3|chr24 (5332326-5332178) | |
| 216-333, gnl|dasNov1|scaffold_64993 (1045-1208) | |
| 216-333, gnl|echTel1|scaffold_103625 (5898-5722) | |
| 216-333, gnl|fr1|chrUn (208871620-208871457) | |
| 216-333, gnl|galGal2|chr27_random (223999-223849) | |
| 216-333, gnl|hg17|chr17 (37919376-37919540) | |
| 216-333, gnl|Hg17|chr17 (37919403-37919520) | |
| 216-333, gnl|loxAfr1|scaffold_19184 (3917-3753) | |
| 216-333, gnl|mm7|chr11 (101164035-101164196) | |
| 216-333, gnl|Mm7|chr11 (101164063-101164180) | |
| 216-333, gnl|monDom2|scaffold_18 (52961349-52961512) | |
| 216-333, gnl|oryCun1|scaffold_118183 (1190-1033) | |
| 216-333, gnl|panTro1|chr19 (41121932-41122096) | |
| 216-333, gnl|rheMac2|chr16 (52642632-52642796) | |
| 216-333, gnl|rn3|chr10 (90078687-90078848) | |
| 216-333, gnl|tetNig1|chr3 (12578393-12578256) | |
| 216-333, gnl|xenTro1|scaffold_1084 (73814-73665) | |
| 339-508, gnl|bosTau2|chr19 (38855588-38855419) | |
| 339-508, gnl|canFam2|chr9 (23747203-23746999) | |
| 339-508, gnl|danRer3|chr24 (5330367-5330175) | |
| 339-508, gnl|dasNov1|scaffold_23588 (10467-10651) | |
| 339-508, gnl|echTel1|scaffold_103625 (5454-5235) | |
| 339-508, gnl|fr1|chrUn (208871399-208871206) | |
| 339-508, gnl|galGal2|chr27_random (223423-223200) | |
| 339-508, gnl|hg17|chr17 (37919819-37920036) | |
| 339-508, gnl|Hg17|chr17 (37919836-37920005) | |
| 339-508, gnl|loxAfr1|scaffold_19184 (3477-3272) | |
| 339-508, gnl|mm7|chr11 (101164459-101164671) | |
| 339-508, gnl|Mm7|chr11 (101164476-101164645) | |
| 339-508, gnl|monDom2|scaffold_18 (52961859-52962070) | |
| 339-508, gnl|oryCun1|scaffold_118183 (850-637) | |
| 339-508, gnl|panTro1|chr9_random (32535000-32534815) | |
| 339-508, gnl|rheMac2|chr16 (52643072-52643289) | |
| 339-508, gnl|rn3|chr10 (90079124-90079336) | |
| 339-508, gnl|tetNig1|chr3 (12578190-12578000) | |
| 339-508, gnl|xenTro1|scaffold_1084 (72649-72458) | |
| 669-863, gnl|bosTau2|chr4 (60204315-60204511) | |
| 669-863, gnl|Hg17|chr7 (137848612-137848420) | |
| 669-863, gnl|Mm7|chr6 (37979911-37979728) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| liv (0.146284) |