Non-Coding RNA Search

Ss1.1-Pig2-45K20.5

Sequence:


               
               GCAAAAACTTTTTATTTTTTTCTTGTCTTCCAAGATCCGATTTCCCCATCTCCCACTTGC
CATCCAGCAGATGCCATCTGTCATCTAAGCTGGTCATTGTTAATAAACAAGGAGACTGTC
TCCTGACAGCCAGCACTGTGTATAATCACTCAGGAACCAGCGGATCTGCAAAGACCTACA
ATCAAAAGCAAATCCCCATTTTCTTTTTATAAAACATTCTACCCTCAACTCCAGTATAAA
CATATTAAAAGAGATAAAAATGTTTAAAATCATGTACTAATTCATTGTATGTTAGAATTG
CAGTAGAACGGAGAGAGAAACGATTTAGCTAGTAATGTATTTGGAAACTCTGAATGTCCT
ATGTGAGTATTAGATTTTAATAGCATGCTTTAAAGACTGATGAATATAAAAGCGCAAGTT
TTGAGTTATTTACTGCTTTAAAGCTGTATCCTAGTTTAGTGATACCAATGATTGCAACTT
TTCTAAAATCATTAAATTATTTGGTGGAGTGAGGCATGGAGCAATCTGGCGTCTTCTGAT
TTGTAAAGTAGTGATGGCAGTGAAGTTGTAGCTGAAATTTAAACTGATCTTCCTTTTTAG
TATATTATCCGTTGTGCCAACTCTTTGAGATTATTTGCAGAATGTGGCTATAAGTTTTAG
TATTTTGTGGAGCAGAGGGATATTTTTAAATGTGCTCATGGGAAGGGCTCAGTAAATGAG
TATTCCTAACTTAGTCACTAGAAGGATTTTAAGGTATTCGTCAATCAGGAGAAAAGTCTT
CCCCCTGCCCCAGGAGTCATTCTGTAATTACCAAGATATGTCAGGAGTAGGATTATGATT
CAAAGAGGTATCCCAAATTCATAAAGCAATACTAATAAAAACTATGTATTTGTTTTCCCC
TCCAAAGTTTTAACTCTTTAAAAATGAATTCCTAGGCTTAACTGTACATTTAATTTGCTT
ATTAGTACTTAGAATTTATTTCACTGATAGTTTATTATTTTGAATTAAAGACTTTTGAAA
GGTGCCCATTTCCCCTAAGAGACAGGTGGAATAAGTTGACTAATATTACAAGCTCTTGTA
GGGAAAAGGAGCTTTTAAAATTATTTACTGAACCTTAGGAAAATACGTCTTAACATCATC
TTGCATCAGTCTTAATAGGCATAAAGTTCATGCTTAATGACTGGAGAAACTTTTGCTTAT
TGCTTTTCCCTCTATAAATATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAAACTTTTTATTTTTTTCTTGTCTTCCAAGATCCGATTTCCCCATCTCCCACTTGC
CATCCAGCAGATGCCATCTGTCATCTAAGCTGGTCATTGTTAATAAACAAGGAGACTGTC
TCCTGACAGCCAGCACTGTGTATAATCACTCAGGAACCAGCGGATCTGCAAAGACCTACA
ATCAAAAGCAAATCCCCATTTTCTTTTTATAAAACATTCTACCCTCAACTCCAGTATAAA
CATATTAAAAGAGATAAAAATGTTTAAAATCATGTACTAATTCATTGTATGTTAGAATTG
CAGTAGAACGGAGAGAGAAACGATTTAGCTAGTAATGTATTTGGAAACTCTGAATGTCCT
ATGTGAGTATTAGATTTTAATAGCATGCTTTAAAGACTGATGAATATAAAAGCGCAAGTT
TTGAGTTATTTACTGCTTTAAAGCTGTATCCTAGTTTAGTGATACCAATGATTGCAACTT
TTCTAAAATCATTAAATTATTTGGTGGAGTGAGGCATGGAGCAATCTGGCGTCTTCTGAT
TTGTAAAGTAGTGATGGCAGTGAAGTTGTAGCTGAAATTTAAACTGATCTTCCTTTTTAG
TATATTATCCGTTGTGCCAACTCTTTGAGATTATTTGCAGAATGTGGCTATAAGTTTTAG
TATTTTGTGGAGCAGAGGGATATTTTTAAATGTGCTCATGGGAAGGGCTCAGTAAATGAG
TATTCCTAACTTAGTCACTAGAAGGATTTTAAGGTATTCGTCAATCAGGAGAAAAGTCTT
CCCCCTGCCCCAGGAGTCATTCTGTAATTACCAAGATATGTCAGGAGTAGGATTATGATT
CAAAGAGGTATCCCAAATTCATAAAGCAATACTAATAAAAACTATGTATTTGTTTTCCCC
TCCAAAGTTTTAACTCTTTAAAAATGAATTCCTAGGCTTAACTGTACATTTAATTTGCTT
ATTAGTACTTAGAATTTATTTCACTGATAGTTTATTATTTTGAATTAAAGACTTTTGAAA
GGTGCCCATTTCCCCTAAGAGACAGGTGGAATAAGTTGACTAATATTACAAGCTCTTGTA
GGGAAAAGGAGCTTTTAAAATTATTTACTGAACCTTAGGAAAATACGTCTTAACATCATC
TTGCATCAGTCTTAATAGGCATAAAGTTCATGCTTAATGACTGGAGAAACTTTTGCTTAT
TGCTTTTCCCTCTATAAATATTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               4-197, - strand, RNAz p=0.949426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-197, - strand, RNAz p=0.949426

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               79-161, - strand, RNAmicro p=0.938681

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               79-161, - strand, RNAmicro p=0.938681

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1220, gnl|bosTau2|chr3 (24521235-24522454)
               

               
               4-1220, gnl|Hg17|chr1 (114018621-114017393)
               

               
               4-1220, gnl|Mm7|chr3 (103758525-103759710)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1220, gnl|bosTau2|chr3 (24521235-24522454)
               

               
               4-1220, gnl|Hg17|chr1 (114018621-114017393)
               

               
               4-1220, gnl|Mm7|chr3 (103758525-103759710)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               jca (0.22792)
               

               
               tes (0.207814)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ldo (0.0970026)

	4-1220, gnl\|bosTau2\|chr3 (24521235-24522454)
	4-1220, gnl\|Hg17\|chr1 (114018621-114017393)
	4-1220, gnl\|Mm7\|chr3 (103758525-103759710)

	jca (0.22792)
	tes (0.207814)
	lin (0.145603)
	spl (0.143184)
	ldo (0.0970026)