Non-Coding RNA Search

Ss1.1-Pig2-45K22.5

Sequence:


               
               ACGACATCGAGCTTACACCCCCGAAAGGGTACGAGGCTCACACTTTCAGCTGGGAGACCT
ACTTGGAGACGACCAAGGCGAAAGCGGCGCCATCGAGACTATTCAACATGGACTGCCCCA
ACCACGGCTTCAAGGTGGGCATGAAGATGGAGGCCGTGGACCTGATGGAGCCCCGGCTCA
TCTGTGTGGCCACCGTGAAGCGGGTGGTGCATCGGCTCCTCAGCATCCACTTCGACGGCT
GGGACAGCGAGTACGACCAGTGGGTGGACTGCGAGTCCCCGGACATCTACCCCGTCGGCT
GGTGTGAGCTCACCGGCTACCAGCTCCAGCCGCCCGTGGCCACAGCAGAGCCCACCACAC
CTCTGAAGGCCAAAGAGGCCACAAAGAAGAGAAAGAAACAGTTCGGGAAGAAAAGAAAAA
GAATACCACCAACCAAGACCCGGCCCCTCAGACAGGGGTCCAAGAAGCCCCTGCTGGAGG
ATGACCCGCAGGCCGCAGAGAAGATCTCGTCGGAGCCCGTTCCTGATGAGATCATCACCG
TGCGCGTGAAGGAAGAGCACCTGGACATGGCCTCGCCCGACAAGGCCCCGAGTCCCCAGC
TGCCTGTTCCCATCGAGAACATCAAGCAGGAGACAGACGACTGAGCCCGCCTCGCTGCCA
GCCTGGCCGCCGCCGCTGCCACCACCCTCCACCCCCTTCCTTGGGAGACTGAGCCTTTTT
GTGTAAAATCGGCCTGGTGCCGCGAGGCCAGGCACCAAGGGAACAGCCAGGGTCTCCTCC
GGCCGGGCCTGCGCGGCCGGGGCTGCCCGAGACGCGCAGATGCGCCGCGAGCGGCTCCCT
CTCCAGCCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGACATCGAGCTTACACCCCCGAAAGGGTACGAGGCTCACACTTTCAGCTGGGAGACCT
ACTTGGAGACGACCAAGGCGAAAGCGGCGCCATCGAGACTATTCAACATGGACTGCCCCA
ACCACGGCTTCAAGGTGGGCATGAAGATGGAGGCCGTGGACCTGATGGAGCCCCGGCTCA
TCTGTGTGGCCACCGTGAAGCGGGTGGTGCATCGGCTCCTCAGCATCCACTTCGACGGCT
GGGACAGCGAGTACGACCAGTGGGTGGACTGCGAGTCCCCGGACATCTACCCCGTCGGCT
GGTGTGAGCTCACCGGCTACCAGCTCCAGCCGCCCGTGGCCACAGCAGAGCCCACCACAC
CTCTGAAGGCCAAAGAGGCCACAAAGAAGAGAAAGAAACAGTTCGGGAAGAAAAGAAAAA
GAATACCACCAACCAAGACCCGGCCCCTCAGACAGGGGTCCAAGAAGCCCCTGCTGGAGG
ATGACCCGCAGGCCGCAGAGAAGATCTCGTCGGAGCCCGTTCCTGATGAGATCATCACCG
TGCGCGTGAAGGAAGAGCACCTGGACATGGCCTCGCCCGACAAGGCCCCGAGTCCCCAGC
TGCCTGTTCCCATCGAGAACATCAAGCAGGAGACAGACGACTGAGCCCGCCTCGCTGCCA
GCCTGGCCGCCGCCGCTGCCACCACCCTCCACCCCCTTCCTTGGGAGACTGAGCCTTTTT
GTGTAAAATCGGCCTGGTGCCGCGAGGCCAGGCACCAAGGGAACAGCCAGGGTCTCCTCC
GGCCGGGCCTGCGCGGCCGGGGCTGCCCGAGACGCGCAGATGCGCCGCGAGCGGCTCCCT
CTCCAGCCAGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               110-228, + strand, RNAz p=0.911613
               

               
               412-531, - strand, RNAz p=0.990776

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-228, + strand, RNAz p=0.911613
               

               
               412-531, - strand, RNAz p=0.990776

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               135-273, - strand, RNAmicro p=0.98929
               

               
               121-240, + strand, RNAmicro p=0.967124

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               135-273, - strand, RNAmicro p=0.98929
               

               
               121-240, + strand, RNAmicro p=0.967124

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC068590, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC068590, -

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               110-345, gnl|bosTau2|chr5 (71086505-71086740)
               

               
               110-345, gnl|Hg17|chr22 (39947592-39947827)
               

               
               110-345, gnl|Mm7|chr15 (81769108-81769343)
               


               
               412-531, gnl|bosTau2|chr5 (71088153-71088272)
               

               
               412-531, gnl|canFam2|chr10 (27066485-27066311)
               

               
               412-531, gnl|echTel1|scaffold_297429 (9588-9418)
               

               
               412-531, gnl|galGal2|chr1 (46477395-46477229)
               

               
               412-531, gnl|hg17|chr22 (39949993-39950168)
               

               
               412-531, gnl|Hg17|chr22 (39950041-39950160)
               

               
               412-531, gnl|mm7|chr15 (81770561-81770724)
               

               
               412-531, gnl|Mm7|chr15 (81770603-81770716)
               

               
               412-531, gnl|oryCun1|scaffold_194022 (14754-14929)
               

               
               412-531, gnl|panTro1|chr23 (40212235-40212410)
               

               
               412-531, gnl|rheMac2|chr10 (85178420-85178595)
               

               
               412-531, gnl|rn3|chr7 (120069920-120070054)
               


               
               532-852, gnl|bosTau2|chr5 (71088678-71089011)
               

               
               532-852, gnl|Hg17|chr22 (39950643-39951020)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-345, gnl|bosTau2|chr5 (71086505-71086740)
               

               
               110-345, gnl|Hg17|chr22 (39947592-39947827)
               

               
               110-345, gnl|Mm7|chr15 (81769108-81769343)
               


               
               412-531, gnl|bosTau2|chr5 (71088153-71088272)
               

               
               412-531, gnl|canFam2|chr10 (27066485-27066311)
               

               
               412-531, gnl|echTel1|scaffold_297429 (9588-9418)
               

               
               412-531, gnl|galGal2|chr1 (46477395-46477229)
               

               
               412-531, gnl|hg17|chr22 (39949993-39950168)
               

               
               412-531, gnl|Hg17|chr22 (39950041-39950160)
               

               
               412-531, gnl|mm7|chr15 (81770561-81770724)
               

               
               412-531, gnl|Mm7|chr15 (81770603-81770716)
               

               
               412-531, gnl|oryCun1|scaffold_194022 (14754-14929)
               

               
               412-531, gnl|panTro1|chr23 (40212235-40212410)
               

               
               412-531, gnl|rheMac2|chr10 (85178420-85178595)
               

               
               412-531, gnl|rn3|chr7 (120069920-120070054)
               


               
               532-852, gnl|bosTau2|chr5 (71088678-71089011)
               

               
               532-852, gnl|Hg17|chr22 (39950643-39951020)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	110-228, + strand, RNAz p=0.911613
	412-531, - strand, RNAz p=0.990776

	135-273, - strand, RNAmicro p=0.98929
	121-240, + strand, RNAmicro p=0.967124

	110-345, gnl\|bosTau2\|chr5 (71086505-71086740)
	110-345, gnl\|Hg17\|chr22 (39947592-39947827)
	110-345, gnl\|Mm7\|chr15 (81769108-81769343)

	412-531, gnl\|bosTau2\|chr5 (71088153-71088272)
	412-531, gnl\|canFam2\|chr10 (27066485-27066311)
	412-531, gnl\|echTel1\|scaffold_297429 (9588-9418)
	412-531, gnl\|galGal2\|chr1 (46477395-46477229)
	412-531, gnl\|hg17\|chr22 (39949993-39950168)
	412-531, gnl\|Hg17\|chr22 (39950041-39950160)
	412-531, gnl\|mm7\|chr15 (81770561-81770724)
	412-531, gnl\|Mm7\|chr15 (81770603-81770716)
	412-531, gnl\|oryCun1\|scaffold_194022 (14754-14929)
	412-531, gnl\|panTro1\|chr23 (40212235-40212410)
	412-531, gnl\|rheMac2\|chr10 (85178420-85178595)
	412-531, gnl\|rn3\|chr7 (120069920-120070054)

	532-852, gnl\|bosTau2\|chr5 (71088678-71089011)
	532-852, gnl\|Hg17\|chr22 (39950643-39951020)