Non-Coding RNA Search

Ss1.1-Pig2-45M13.5

Sequence:


               
               AGGAGGCACGGGCCGGAGACGTTTCTGGAAGCCCAAGGCCCGGGAGCGGCATCTATTGAA
GGACTCGGACGGTGTGCTCTGCCGCTACAAAAAGATCCTAGGCACCTTCCAGAAGCTGAA
GAGCATGTCTCGGGCCTTCGAGCACCACCGAGTGGACCGCAACACCGTGGCGCTGACCAC
GCCCATCGCGGAGCTGCTCATCGTCGCCCCCGAGAAGCTGGCCGAGGTGGGCGAGTTCGA
CCCCTCCAAGGAGCGTCTGCTGGAATATTCGCGCCGGTGCTTCCTGGCCCTTGACGACGA
GACCCTGAAGAAGGTGCAGGCCCTCAAGAAGAGCAAGCTGCTGCTTCCCATCACTTACCG
CTTCAAGCGGTGATCCCGCCATCTGGCCCAGGACACGCCCTCTGGCCCCCACTTCCCTCC
TCTTCGGCCCCCCGGCACCCGGGCAAGCGTGTGCATGAGTGGTGCACCCATGACGAGGGC
GTCGAGGGTGGGCGGCTTGTTTCTGCCCGTCCTCTCTCCTTCCCCTGCTGTAGACCGCCG
TTCCCTCCTCAGGCTCCCGGTACATAGATCTGCCCCCTCTGCCTCCCACATTCCTAGCGT
CCTCCCCTTTCTCCGCATTCCCGGGGTTGGGGGCGGTCCTCCTTTAGAAAAAGTTCCCAA
GAATTATCAAGGGACCAGATCCTACCCTTTCCTAAACACTGGTACCCCCTCCCACTTGAG
CGGGACTGTCCTGCCCTCACAGGGCCCTTCCTCCTGGGACCCTGCGGGGCAGAGGGGCAC
TGTACACATCCCGTCTCCGCCCCCGGACCCGAGGAGTGGCCGGCCCACCAGCCCGCCCTG
CAAGGAGCTCCCCACCCGCATTCCGGGACAGCCCTGAGTCCACGTGAGAGAGAATTATTA
AGAGAATTTAAATTAAAAAGAGGTGATAAAATTTGGAATAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGCACGGGCCGGAGACGTTTCTGGAAGCCCAAGGCCCGGGAGCGGCATCTATTGAA
GGACTCGGACGGTGTGCTCTGCCGCTACAAAAAGATCCTAGGCACCTTCCAGAAGCTGAA
GAGCATGTCTCGGGCCTTCGAGCACCACCGAGTGGACCGCAACACCGTGGCGCTGACCAC
GCCCATCGCGGAGCTGCTCATCGTCGCCCCCGAGAAGCTGGCCGAGGTGGGCGAGTTCGA
CCCCTCCAAGGAGCGTCTGCTGGAATATTCGCGCCGGTGCTTCCTGGCCCTTGACGACGA
GACCCTGAAGAAGGTGCAGGCCCTCAAGAAGAGCAAGCTGCTGCTTCCCATCACTTACCG
CTTCAAGCGGTGATCCCGCCATCTGGCCCAGGACACGCCCTCTGGCCCCCACTTCCCTCC
TCTTCGGCCCCCCGGCACCCGGGCAAGCGTGTGCATGAGTGGTGCACCCATGACGAGGGC
GTCGAGGGTGGGCGGCTTGTTTCTGCCCGTCCTCTCTCCTTCCCCTGCTGTAGACCGCCG
TTCCCTCCTCAGGCTCCCGGTACATAGATCTGCCCCCTCTGCCTCCCACATTCCTAGCGT
CCTCCCCTTTCTCCGCATTCCCGGGGTTGGGGGCGGTCCTCCTTTAGAAAAAGTTCCCAA
GAATTATCAAGGGACCAGATCCTACCCTTTCCTAAACACTGGTACCCCCTCCCACTTGAG
CGGGACTGTCCTGCCCTCACAGGGCCCTTCCTCCTGGGACCCTGCGGGGCAGAGGGGCAC
TGTACACATCCCGTCTCCGCCCCCGGACCCGAGGAGTGGCCGGCCCACCAGCCCGCCCTG
CAAGGAGCTCCCCACCCGCATTCCGGGACAGCCCTGAGTCCACGTGAGAGAGAATTATTA
AGAGAATTTAAATTAAAAAGAGGTGATAAAATTTGGAATAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47196839|emb|CAF88382.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47196839|emb|CAF88382.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               323-440, - strand, RNAz p=0.698701
               

               
               533-763, - strand, RNAz p=0.998291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-440, - strand, RNAz p=0.698701
               

               
               533-763, - strand, RNAz p=0.998291

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               47-481, gnl|bosTau2|chr18 (52527607-52528033)
               

               
               47-481, gnl|Hg17|chr19 (60855598-60855979)
               

               
               47-481, gnl|Mm7|chr7 (4637267-4637626)
               


               
               533-829, gnl|bosTau2|chr18 (52528049-52528354)
               

               
               533-829, gnl|canFam2|chr1 (105169350-105169056)
               

               
               533-829, gnl|dasNov1|scaffold_148062 (4427-4062)
               

               
               533-829, gnl|echTel1|scaffold_294460 (38368-38669)
               

               
               533-829, gnl|hg17|chr19 (60855970-60856238)
               

               
               533-829, gnl|Hg17|chr19 (60855984-60856252)
               

               
               533-829, gnl|loxAfr1|scaffold_76195 (11822-12211)
               

               
               533-829, gnl|mm7|chr7 (4637628-4637778)
               

               
               533-829, gnl|monDom2|scaffold_352 (59597-59321)
               

               
               533-829, gnl|panTro1|chr20 (58298658-58298909)
               

               
               533-829, gnl|rheMac2|chr19 (61682307-61682599)
               

               
               533-829, gnl|rn3|chr1 (67596869-67596723)
               


               
               832-954, gnl|bosTau2|chr18 (52528326-52528445)
               

               
               832-954, gnl|Hg17|chr19 (60856223-60856339)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-481, gnl|bosTau2|chr18 (52527607-52528033)
               

               
               47-481, gnl|Hg17|chr19 (60855598-60855979)
               

               
               47-481, gnl|Mm7|chr7 (4637267-4637626)
               


               
               533-829, gnl|bosTau2|chr18 (52528049-52528354)
               

               
               533-829, gnl|canFam2|chr1 (105169350-105169056)
               

               
               533-829, gnl|dasNov1|scaffold_148062 (4427-4062)
               

               
               533-829, gnl|echTel1|scaffold_294460 (38368-38669)
               

               
               533-829, gnl|hg17|chr19 (60855970-60856238)
               

               
               533-829, gnl|Hg17|chr19 (60855984-60856252)
               

               
               533-829, gnl|loxAfr1|scaffold_76195 (11822-12211)
               

               
               533-829, gnl|mm7|chr7 (4637628-4637778)
               

               
               533-829, gnl|monDom2|scaffold_352 (59597-59321)
               

               
               533-829, gnl|panTro1|chr20 (58298658-58298909)
               

               
               533-829, gnl|rheMac2|chr19 (61682307-61682599)
               

               
               533-829, gnl|rn3|chr1 (67596869-67596723)
               


               
               832-954, gnl|bosTau2|chr18 (52528326-52528445)
               

               
               832-954, gnl|Hg17|chr19 (60856223-60856339)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.770713)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               fbs (0.175346)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               fbs (0.175346)
               

               
               cty (0.10408)

	323-440, - strand, RNAz p=0.698701
	533-763, - strand, RNAz p=0.998291

	47-481, gnl\|bosTau2\|chr18 (52527607-52528033)
	47-481, gnl\|Hg17\|chr19 (60855598-60855979)
	47-481, gnl\|Mm7\|chr7 (4637267-4637626)

	533-829, gnl\|bosTau2\|chr18 (52528049-52528354)
	533-829, gnl\|canFam2\|chr1 (105169350-105169056)
	533-829, gnl\|dasNov1\|scaffold_148062 (4427-4062)
	533-829, gnl\|echTel1\|scaffold_294460 (38368-38669)
	533-829, gnl\|hg17\|chr19 (60855970-60856238)
	533-829, gnl\|Hg17\|chr19 (60855984-60856252)
	533-829, gnl\|loxAfr1\|scaffold_76195 (11822-12211)
	533-829, gnl\|mm7\|chr7 (4637628-4637778)
	533-829, gnl\|monDom2\|scaffold_352 (59597-59321)
	533-829, gnl\|panTro1\|chr20 (58298658-58298909)
	533-829, gnl\|rheMac2\|chr19 (61682307-61682599)
	533-829, gnl\|rn3\|chr1 (67596869-67596723)

	832-954, gnl\|bosTau2\|chr18 (52528326-52528445)
	832-954, gnl\|Hg17\|chr19 (60856223-60856339)

	elu (0.770713)
	fhi (0.339155)
	hyp (0.285673)
	fbs (0.175346)
	cty (0.10408)