Non-Coding RNA Search

Ss1.1-Pig2-46B21.5

Sequence:


               
               AAAACCATCCCAAGAGCTAAGAGGGGGAGATGAAGAACGCCTTCAGTGAGTCGGCCTGTG
AGAGGCAACCCACGGTCCTCTGGATTCTTGACTTTTGTTGCTCTGTTGAGTGCCTGTCCT
TGTCTGTCACCTGGACTTACACAGGTCCTGAGCCAACAGGGGGCTTTCATCCCCAGGGAT
CTGTTTCCTTGCCGACAATGAAACCCCACCCTTCATCTGACATTCCTTTTGCTCCAACTA
GTCAAAATGGGTGCCCATAGCTGCCCTTCTGCCCTTGCTCCAGCTCATCCTTCTTTGAGA
AAGGAAAGGCAGGGCTTCCTTAGGGACGCCACCTTGGGTCTGTTCTGTTGCTCTGCCTCA
TTTCTCTTGCAGCCCTGAACCTGACTTGTGTTCACCGTCCCCTTGGTCAGGGTCCGTCTG
CTGATGTGCATCACGAACTGGACAGTGTGTGCGTGGTCACCTGCTACCCCCCGATCTGGG
AGTCGAGCTGTCTTCCCACCTCTGGTGCTCCTGCCACCTGTGAGAGGGTCCCGTCCAGGG
GACTAGGAACCCCAGGAGGAGAGTCCTTCCTCGGCAGAGCTCATTGCCATCAACTGGAAT
CGAGGTTGCACACTGTGATTTTTACACCGAAAAGCCAAACGGAGCTGGCCCCCCAGGGCC
TAGGGAGACCAGTCTTCCTCCGATATGCTTGCCTAAACCAGCATGATGCTTCAGAGAGCC
CCTCTCTGCCCCTGGAGGCGTGGATTCTCTTCCTGATGTGGACTCTGATGGGTTGGTCTT
TGGGAGACAGAGGTGGGGTGGGGCTTCCAGCATCCCAGTTTGGAAAAGAGAGGAGTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACCATCCCAAGAGCTAAGAGGGGGAGATGAAGAACGCCTTCAGTGAGTCGGCCTGTG
AGAGGCAACCCACGGTCCTCTGGATTCTTGACTTTTGTTGCTCTGTTGAGTGCCTGTCCT
TGTCTGTCACCTGGACTTACACAGGTCCTGAGCCAACAGGGGGCTTTCATCCCCAGGGAT
CTGTTTCCTTGCCGACAATGAAACCCCACCCTTCATCTGACATTCCTTTTGCTCCAACTA
GTCAAAATGGGTGCCCATAGCTGCCCTTCTGCCCTTGCTCCAGCTCATCCTTCTTTGAGA
AAGGAAAGGCAGGGCTTCCTTAGGGACGCCACCTTGGGTCTGTTCTGTTGCTCTGCCTCA
TTTCTCTTGCAGCCCTGAACCTGACTTGTGTTCACCGTCCCCTTGGTCAGGGTCCGTCTG
CTGATGTGCATCACGAACTGGACAGTGTGTGCGTGGTCACCTGCTACCCCCCGATCTGGG
AGTCGAGCTGTCTTCCCACCTCTGGTGCTCCTGCCACCTGTGAGAGGGTCCCGTCCAGGG
GACTAGGAACCCCAGGAGGAGAGTCCTTCCTCGGCAGAGCTCATTGCCATCAACTGGAAT
CGAGGTTGCACACTGTGATTTTTACACCGAAAAGCCAAACGGAGCTGGCCCCCCAGGGCC
TAGGGAGACCAGTCTTCCTCCGATATGCTTGCCTAAACCAGCATGATGCTTCAGAGAGCC
CCTCTCTGCCCCTGGAGGCGTGGATTCTCTTCCTGATGTGGACTCTGATGGGTTGGTCTT
TGGGAGACAGAGGTGGGGTGGGGCTTCCAGCATCCCAGTTTGGAAAAGAGAGGAGTTTGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               40-271, - strand, RNAz p=0.99613
               

               
               466-583, - strand, RNAz p=0.74659
               

               
               624-822, + strand, RNAz p=0.987849

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-271, - strand, RNAz p=0.99613
               

               
               466-583, - strand, RNAz p=0.74659
               

               
               624-822, + strand, RNAz p=0.987849

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr16 (4221407-4222246)
               

               
               1-840, gnl|Hg17|chr1 (203024971-203025806)
               

               
               1-840, gnl|Mm7|chr1 (131191776-131190977)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr16 (4221407-4222246)
               

               
               1-840, gnl|Hg17|chr1 (203024971-203025806)
               

               
               1-840, gnl|Mm7|chr1 (131191776-131190977)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               aor (0.195274)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	40-271, - strand, RNAz p=0.99613
	466-583, - strand, RNAz p=0.74659
	624-822, + strand, RNAz p=0.987849

	1-840, gnl\|bosTau2\|chr16 (4221407-4222246)
	1-840, gnl\|Hg17\|chr1 (203024971-203025806)
	1-840, gnl\|Mm7\|chr1 (131191776-131190977)