Non-Coding RNA Search

Ss1.1-Pig2-46C06.5

Sequence:


               
               TTGAGAAATAAGAACCTAGGTTACACATCTCTTTACCGTGATTTAATCTCCAAGTGAATG
ACTTATTGATGGAGAAAGCATAAGGAAATGCAGTCTCTGCTCAGCCTGCTGTGTACTGAG
TACTGTTTTTTTTTTTTTCACTCTTATGCAACTTTAAATAAAACAGTACAAATTATATTT
ATCCCAGTATGATGAGGGTAGACTATTTTAATTTGATCACTTTATATAATCATAAAATTA
CTTAGTTTCAGCATTGTTCCAAGTATCCAAATCTTGAAAGAATGGTGCTGAGGCAACATA
ATAATTTTTCTTTGGTGGATCAGATGTTCAATTCTCTTTGACCATATATTTTTCTTATAT
AGACATTTTTAAACTAATGATGTCATTTCCATTTTTGTTAATGAGGCCATTTTAAAAAGC
TGCAGCTGTACCCATGTGTCTGTTCCACGTTAACATCTATTTCTCTGCAGGCCCGGGTTG
TTTTTGTGATGATTGTGCTGATCCAGCTCATCATTCTCATTACTTTCAGGTTTCGAGCAC
ATCCAGAGCATAAAGGGCCGCCAGGATTTGTAAATTTGACCTCATTTTCCCTTCACGTCT
TGAGCAAAATAAACATCTTCTACTATTCAGTGTTGTTGCTGACCCTATATACAGTGCTGG
GACCATGGTTTGTTGGTGAAATCACTAAAGGCAAACTGGGCTGCTGCTTTTCCTTTGGGA
TCTTTGTTGATGGACATTTCCTACCAGGCAGCCTAACGTTTATATTTGGAATTCTCCAGC
TGGTGTTTTTTAACATCCCCTTGATGGCTTACCTGTGTTGGAGTTTGCTGCAGCGGTGCT
TTGGTCACAACTTCAGGTCTCATCTCCGTCAAGGAAAATACTTGAAAATTATACCTGTTC
ATCTACTTATGTTACTGCTGTACATCTGGCAGATTTATTCCTGCTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGAAATAAGAACCTAGGTTACACATCTCTTTACCGTGATTTAATCTCCAAGTGAATG
ACTTATTGATGGAGAAAGCATAAGGAAATGCAGTCTCTGCTCAGCCTGCTGTGTACTGAG
TACTGTTTTTTTTTTTTTCACTCTTATGCAACTTTAAATAAAACAGTACAAATTATATTT
ATCCCAGTATGATGAGGGTAGACTATTTTAATTTGATCACTTTATATAATCATAAAATTA
CTTAGTTTCAGCATTGTTCCAAGTATCCAAATCTTGAAAGAATGGTGCTGAGGCAACATA
ATAATTTTTCTTTGGTGGATCAGATGTTCAATTCTCTTTGACCATATATTTTTCTTATAT
AGACATTTTTAAACTAATGATGTCATTTCCATTTTTGTTAATGAGGCCATTTTAAAAAGC
TGCAGCTGTACCCATGTGTCTGTTCCACGTTAACATCTATTTCTCTGCAGGCCCGGGTTG
TTTTTGTGATGATTGTGCTGATCCAGCTCATCATTCTCATTACTTTCAGGTTTCGAGCAC
ATCCAGAGCATAAAGGGCCGCCAGGATTTGTAAATTTGACCTCATTTTCCCTTCACGTCT
TGAGCAAAATAAACATCTTCTACTATTCAGTGTTGTTGCTGACCCTATATACAGTGCTGG
GACCATGGTTTGTTGGTGAAATCACTAAAGGCAAACTGGGCTGCTGCTTTTCCTTTGGGA
TCTTTGTTGATGGACATTTCCTACCAGGCAGCCTAACGTTTATATTTGGAATTCTCCAGC
TGGTGTTTTTTAACATCCCCTTGATGGCTTACCTGTGTTGGAGTTTGCTGCAGCGGTGCT
TTGGTCACAACTTCAGGTCTCATCTCCGTCAAGGAAAATACTTGAAAATTATACCTGTTC
ATCTACTTATGTTACTGCTGTACATCTGGCAGATTTATTCCTGCTACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61887797|ref|XP_593028.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61887797|ref|XP_593028.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               831-948, - strand, RNAz p=0.679215

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               831-948, - strand, RNAz p=0.679215

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               132-556, gnl|bosTau2|chr10 (25465984-25465562)
               

               
               132-556, gnl|Hg17|chr15 (41243520-41249168)
               


               
               753-948, gnl|bosTau2|chr10 (25456782-25456587)
               

               
               753-948, gnl|Hg17|chr15 (41263728-41263918)
               

               
               753-948, gnl|Mm7|chr2 (120747641-120747836)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-556, gnl|bosTau2|chr10 (25465984-25465562)
               

               
               132-556, gnl|Hg17|chr15 (41243520-41249168)
               


               
               753-948, gnl|bosTau2|chr10 (25456782-25456587)
               

               
               753-948, gnl|Hg17|chr15 (41263728-41263918)
               

               
               753-948, gnl|Mm7|chr2 (120747641-120747836)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	132-556, gnl\|bosTau2\|chr10 (25465984-25465562)
	132-556, gnl\|Hg17\|chr15 (41243520-41249168)

	753-948, gnl\|bosTau2\|chr10 (25456782-25456587)
	753-948, gnl\|Hg17\|chr15 (41263728-41263918)
	753-948, gnl\|Mm7\|chr2 (120747641-120747836)