Non-Coding RNA Search

Ss1.1-Pig2-46G20.5

Sequence:


               
               TTTGTTCACGTGCCCCCTCTGGGCAAGCCGTACAATGCAGACCAGCTGGGCAGGGCACTC
CGGGCCATCATCGAGGAGATGCTGGACGTCCTGGAGCAGTCAGAAGGCAAAATCAACTGT
TGCCAAAACACTGAGTGCCACTCAGGCCTCCCGAGACCTCATCCCGCCCGGGACTCTGAG
AGAGACGTCCACCCTCCGGGGCCTGACCAGGAAGGACAAGTTCATCAGCTGCGGATCTGA
TTTGGATCAAATATGCCAACTCACACACCTCCTCTCCCTTTTTCTCTGCAAAAGCCCTGG
TTGATCTGAAGGGGGCAGCTGAAGATTTTTTTTTTTTTTTTTTTTTTTTTCGGTTTCTCT
TTGCATCTGGGGATACAGCTGTGGCAGCCAGGAAGCCTCTAGGAGGCCCTGAATCATGCA
GAGAACCCTAATCAGGTGGCCGGATCTCCACTCTTCGATCCCATGGCTGGGGCCACCTGC
TTTTCTAAGTCTGTGGCAGAGGGATTCCTGAGTTCCCTCTGTCTGTGACTGGTTTTTCCC
AAATTTAAAAGCCTCATAAAGAGTTTGCCTTGTTCCATGTCCCAACAGCCTCGACAGCCC
CAGCAAGGGCTGCCTTCGGATATGGTATGGGTTTGCGCTTCTTTCTTATTCTCTTTTTCA
AAACAATAGTGCTAGTTTGGGCACAGAGTAATTTATATTACCTTTGGTTAAAACGCAGGC
TTTAGCCAAACACAGAAGTGTCTTTTCTTTTTAATGGGGTGTGGCCCCTTCTGCCTCCTG
TCCCAACCCTGGACCTGCATCTCTGGGTGGGGGCTGACATCGAGGTACCCTTGCCATAGT
GGGAGTGGGCAGGGTCCATGGCCAGACCATGGGGAGGCGGGGTGGCTGCCTCCCCAGGAG
ACCGAAAGCATTGGCTGATCTTTTCAACAAGCCAGCTCTACCCCTGGGGCTTCCAGAGCT
GAGACGCCAGTGGAAAGCAGACTGTCAGGTCAATGGGCACATGACTTGTTTTTTGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTCACGTGCCCCCTCTGGGCAAGCCGTACAATGCAGACCAGCTGGGCAGGGCACTC
CGGGCCATCATCGAGGAGATGCTGGACGTCCTGGAGCAGTCAGAAGGCAAAATCAACTGT
TGCCAAAACACTGAGTGCCACTCAGGCCTCCCGAGACCTCATCCCGCCCGGGACTCTGAG
AGAGACGTCCACCCTCCGGGGCCTGACCAGGAAGGACAAGTTCATCAGCTGCGGATCTGA
TTTGGATCAAATATGCCAACTCACACACCTCCTCTCCCTTTTTCTCTGCAAAAGCCCTGG
TTGATCTGAAGGGGGCAGCTGAAGATTTTTTTTTTTTTTTTTTTTTTTTTCGGTTTCTCT
TTGCATCTGGGGATACAGCTGTGGCAGCCAGGAAGCCTCTAGGAGGCCCTGAATCATGCA
GAGAACCCTAATCAGGTGGCCGGATCTCCACTCTTCGATCCCATGGCTGGGGCCACCTGC
TTTTCTAAGTCTGTGGCAGAGGGATTCCTGAGTTCCCTCTGTCTGTGACTGGTTTTTCCC
AAATTTAAAAGCCTCATAAAGAGTTTGCCTTGTTCCATGTCCCAACAGCCTCGACAGCCC
CAGCAAGGGCTGCCTTCGGATATGGTATGGGTTTGCGCTTCTTTCTTATTCTCTTTTTCA
AAACAATAGTGCTAGTTTGGGCACAGAGTAATTTATATTACCTTTGGTTAAAACGCAGGC
TTTAGCCAAACACAGAAGTGTCTTTTCTTTTTAATGGGGTGTGGCCCCTTCTGCCTCCTG
TCCCAACCCTGGACCTGCATCTCTGGGTGGGGGCTGACATCGAGGTACCCTTGCCATAGT
GGGAGTGGGCAGGGTCCATGGCCAGACCATGGGGAGGCGGGGTGGCTGCCTCCCCAGGAG
ACCGAAAGCATTGGCTGATCTTTTCAACAAGCCAGCTCTACCCCTGGGGCTTCCAGAGCT
GAGACGCCAGTGGAAAGCAGACTGTCAGGTCAATGGGCACATGACTTGTTTTTTGTTTTT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               276-432, - strand, RNAz p=0.989458
               

               
               543-650, + strand, RNAz p=0.956368
               

               
               681-785, - strand, RNAz p=0.5194

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-432, - strand, RNAz p=0.989458
               

               
               543-650, + strand, RNAz p=0.956368
               

               
               681-785, - strand, RNAz p=0.5194

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               282-399, + strand, RNAmicro p=0.996475

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               282-399, + strand, RNAmicro p=0.996475

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC042138, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC042138, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1013, gnl|bosTau2|chr7 (1805260-1806268)
               

               
               1-1013, gnl|Hg17|chr19 (18335259-18336646)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1013, gnl|bosTau2|chr7 (1805260-1806268)
               

               
               1-1013, gnl|Hg17|chr19 (18335259-18336646)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	276-432, - strand, RNAz p=0.989458
	543-650, + strand, RNAz p=0.956368
	681-785, - strand, RNAz p=0.5194

	1-1013, gnl\|bosTau2\|chr7 (1805260-1806268)
	1-1013, gnl\|Hg17\|chr19 (18335259-18336646)