Non-Coding RNA Search

Ss1.1-Pig2-46H20.5

Sequence:


               
               AACTGTGAGGGACTGACAGCTTAGTCAGTGTGTATTGTAGATTATAAACTTGAAATCTTA
TAAACCTAAGGTTTCAGTTTGACAGAAGTGTGATATATGTAACTTGTGCCATGGACCAAA
TGGTCACTTTACCCCAGCTGAAAATGAGTGACAGTCACAGCTTGATAGTGATTGTATTAT
ATTCCTTTAAGCAAAAAGGAAACATTTAATATTCAGAATATTTTTATCCCAAATACTATG
ACATTAAGAATTTTTTAAAAACCAGACTCTGCTGTCCTTCGTATGTGAAGTTGACACTAC
TGATTTGTCAATACCAAATGTTGGGTTAAAGTATTTAATTTTTACTTATTTATTTTTCTG
TTGCATCAAAAAATGATTGCATCCTAACTTTTATGACCTACCAAATTTAAAATGTGTAAA
CATTGTTATTTACATTGTTCTAGAAAAGAGGTTAATGTAGTGACCTTGCTCACTTCCAGG
AGAGAAATAAATGACTTGCAATGGAAGAGGATTTTAGTGCTTTTTTTTCCCCAAAACAGA
CATTATTAAGCTGCTGTTGTAAGGTATTGATGTTTGCAGCTCTTTAGACTATTGAGACAT
TTTTTATTTATGGGTATTTATAAAAAAAAGGAATCTGTCAAGGAGACTGCTCTACATAAC
TTGAGAGTAGCATTATTTAATTAAAGAACAAGTAGCATTTTTTTTGGTAGTGCCTGTCCA
TACCTATTGTCAGTGTTTGCCTTGTAAGGTGTTTTTTTTTTTTTTTCAGTTCACTTTGGA
GTGACGGTTTTGTCCAAGGTTTTGGATGAGGAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGTGAGGGACTGACAGCTTAGTCAGTGTGTATTGTAGATTATAAACTTGAAATCTTA
TAAACCTAAGGTTTCAGTTTGACAGAAGTGTGATATATGTAACTTGTGCCATGGACCAAA
TGGTCACTTTACCCCAGCTGAAAATGAGTGACAGTCACAGCTTGATAGTGATTGTATTAT
ATTCCTTTAAGCAAAAAGGAAACATTTAATATTCAGAATATTTTTATCCCAAATACTATG
ACATTAAGAATTTTTTAAAAACCAGACTCTGCTGTCCTTCGTATGTGAAGTTGACACTAC
TGATTTGTCAATACCAAATGTTGGGTTAAAGTATTTAATTTTTACTTATTTATTTTTCTG
TTGCATCAAAAAATGATTGCATCCTAACTTTTATGACCTACCAAATTTAAAATGTGTAAA
CATTGTTATTTACATTGTTCTAGAAAAGAGGTTAATGTAGTGACCTTGCTCACTTCCAGG
AGAGAAATAAATGACTTGCAATGGAAGAGGATTTTAGTGCTTTTTTTTCCCCAAAACAGA
CATTATTAAGCTGCTGTTGTAAGGTATTGATGTTTGCAGCTCTTTAGACTATTGAGACAT
TTTTTATTTATGGGTATTTATAAAAAAAAGGAATCTGTCAAGGAGACTGCTCTACATAAC
TTGAGAGTAGCATTATTTAATTAAAGAACAAGTAGCATTTTTTTTGGTAGTGCCTGTCCA
TACCTATTGTCAGTGTTTGCCTTGTAAGGTGTTTTTTTTTTTTTTTCAGTTCACTTTGGA
GTGACGGTTTTGTCCAAGGTTTTGGATGAGGAGCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-116, + strand, RNAz p=0.528154

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, + strand, RNAz p=0.528154

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               21-111, + strand, RNAmicro p=0.997652

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               21-111, + strand, RNAmicro p=0.997652

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_019091, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_019091, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-816, gnl|bosTau2|chr2 (7929346-7928547)
               

               
               1-816, gnl|Hg17|chr2 (179194419-179195219)
               

               
               1-816, gnl|Mm7|chr2 (76539596-76540398)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr2 (7929346-7928547)
               

               
               1-816, gnl|Hg17|chr2 (179194419-179195219)
               

               
               1-816, gnl|Mm7|chr2 (76539596-76540398)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               kid (0.259471)
               

               
               mgm (0.180343)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               mgm (0.180343)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)

	1-816, gnl\|bosTau2\|chr2 (7929346-7928547)
	1-816, gnl\|Hg17\|chr2 (179194419-179195219)
	1-816, gnl\|Mm7\|chr2 (76539596-76540398)