Non-Coding RNA Search

Ss1.1-Pig2-46H21.5

Sequence:


               
               GGCGGACTGCCAGGACCGCTCCGACGAGGCGGACTGCGATGCCGTCTGCCTGCCCAACCA
GTTCCGGTGCGCCAGCGGCCAGTGCGTCCTCATCAAGCAGCAGTGCGACTCCTTTCCTGA
CTGCATCGACGGCTCCGACGAGCTCATGTGCGAAATCACCAAGCTGCCCTCGGACGACAG
CCCGGCCCACAGCAGCGCCATCGGGCCTGTCATCGGCATCATCCTGTCGCTCTTCGTCAT
GGGCGGGGTCTACTTCGTGTGCCAGCGCGTGGTGTGTCAGCGCTACGCGGGGGCCACCGG
GCCCTTCCCGCACGAGTACGTCAGTGGGACCCCCCACGTGCCCCTCAACTTCATCGCGCC
GGGCGGCTCCCAGCACGGGCCCTTCCCAGGCATCTCCTGCAGCAAGTCCATGATGAGCTC
CGTGAGCCTGATGGGGGGCCGGGCCGGGGTGCCCCTCTACGACCGGAACCACGTCACCGG
GGCCTCGTCCAGCAGCTCATCCAGCACCAAGGCCACGCTGTACCCGCCGATCCTGAACCC
GCCACCATCCCCCGCCACGGACCCCTCCCTCTACAACCTGGACGTGTTCTACTCCTCCAA
CATTCCGGCCGCCGCCAGGCCCTACAGGCCCTACATCATCCGCGGCATGGCGCCCCCGAC
GACGCCCTGCAGTACAGACGTGTGCGACAGCGACTACAGCGCCAGCCGCTGGAAGGCCAG
CAAGTACTACCTGGATTTGAACTCGGACTCAGACCCCTACCCACCCCCGCCCACGCCGCA
CAGCCAGTACCTGTCGGCGGAGGACAGCTGCCCGCCTTCGCCAGCCACGGAGAGGAGTTA
CTTCCACCTCTTCCCGCCCCCACCGTCCCCCTGCACGGACTCGTCCTGACCTCGGCCGGG
CCACCCCGGCCTCTCTGTGCCCGTGTAAATAGTTTTAAATATGAACAAAGAAAAAATTAT
ATTTTATGATTTAAAAAATAAATATAGTTGGGATTTTAAAAACATGAGAAATGTGAACAG
TGATGGGTGGGCCGGGCGGGGAAGACTTTGTACAGTGCAGAAAATATTTATAAACCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGACTGCCAGGACCGCTCCGACGAGGCGGACTGCGATGCCGTCTGCCTGCCCAACCA
GTTCCGGTGCGCCAGCGGCCAGTGCGTCCTCATCAAGCAGCAGTGCGACTCCTTTCCTGA
CTGCATCGACGGCTCCGACGAGCTCATGTGCGAAATCACCAAGCTGCCCTCGGACGACAG
CCCGGCCCACAGCAGCGCCATCGGGCCTGTCATCGGCATCATCCTGTCGCTCTTCGTCAT
GGGCGGGGTCTACTTCGTGTGCCAGCGCGTGGTGTGTCAGCGCTACGCGGGGGCCACCGG
GCCCTTCCCGCACGAGTACGTCAGTGGGACCCCCCACGTGCCCCTCAACTTCATCGCGCC
GGGCGGCTCCCAGCACGGGCCCTTCCCAGGCATCTCCTGCAGCAAGTCCATGATGAGCTC
CGTGAGCCTGATGGGGGGCCGGGCCGGGGTGCCCCTCTACGACCGGAACCACGTCACCGG
GGCCTCGTCCAGCAGCTCATCCAGCACCAAGGCCACGCTGTACCCGCCGATCCTGAACCC
GCCACCATCCCCCGCCACGGACCCCTCCCTCTACAACCTGGACGTGTTCTACTCCTCCAA
CATTCCGGCCGCCGCCAGGCCCTACAGGCCCTACATCATCCGCGGCATGGCGCCCCCGAC
GACGCCCTGCAGTACAGACGTGTGCGACAGCGACTACAGCGCCAGCCGCTGGAAGGCCAG
CAAGTACTACCTGGATTTGAACTCGGACTCAGACCCCTACCCACCCCCGCCCACGCCGCA
CAGCCAGTACCTGTCGGCGGAGGACAGCTGCCCGCCTTCGCCAGCCACGGAGAGGAGTTA
CTTCCACCTCTTCCCGCCCCCACCGTCCCCCTGCACGGACTCGTCCTGACCTCGGCCGGG
CCACCCCGGCCTCTCTGTGCCCGTGTAAATAGTTTTAAATATGAACAAAGAAAAAATTAT
ATTTTATGATTTAAAAAATAAATATAGTTGGGATTTTAAAAACATGAGAAATGTGAACAG
TGATGGGTGGGCCGGGCGGGGAAGACTTTGTACAGTGCAGAAAATATTTATAAACCTAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8UW21_LAPHA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8UW21_LAPHA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-390, gnl|bosTau2|chr29 (42141073-42140835)
               

               
               152-390, gnl|Hg17|chr11 (67962489-67962727)
               

               
               152-390, gnl|Mm7|chr19 (3486659-3486421)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-390, gnl|bosTau2|chr29 (42141073-42140835)
               

               
               152-390, gnl|Hg17|chr11 (67962489-67962727)
               

               
               152-390, gnl|Mm7|chr19 (3486659-3486421)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cst (0.280073)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	152-390, gnl\|bosTau2\|chr29 (42141073-42140835)
	152-390, gnl\|Hg17\|chr11 (67962489-67962727)
	152-390, gnl\|Mm7\|chr19 (3486659-3486421)

	cst (0.280073)
	cut (0.169924)
	cki (0.165235)
	pty (0.142714)
	che (0.136314)
	cov (0.132153)
	ese (0.126502)
	jej (0.0989218)