Non-Coding RNA Search

Ss1.1-Pig2-46L21.5

Sequence:


               
               GCCCCCTGATATCCGGAGGATCAGCAGCCGTTATAGCCAGGTGGGCACCCAAGAGTGTGC
CATTGTGGAGTTTGAAGAGGTGGAAGCCGCCATCAAAGCCCATGAGTTCATGATCTCAGA
GTCTCAGGGCAAAGAGAGCATGAAAGCTGTCCTGATTGGTATGAAGCCACCCAAAAAGAA
ACCATCCAAAGAGAAGAACCAGGATGAAGAGTCCACTTCGAGCATCCACCTGAACAAGTC
CCTGAACAGGAGAGTTGAGGAGCTTCAGTACATGGGGGATGAGTCTTCTGCCAATAGCTC
CTCTGACCCGGAGAGCAACCCCACGTCCCCTCTGGCTGGCCGGAGACACGTGGTCACCAA
CAAGCTCAGCCCTTCTGGCCACCAGAATCTCTTTCTGAGCCCAAATGCCTCCCCGTGCAC
GAGTCCTTGGAACAGCCCCTTGGCTCAACGCAAAGGCATTTCCAGAAAATCCCCACTGGC
CGAAGAAGGTAGGCTGAACTTGAGTGCCAGTCCTGAGATCTTTCGCAAGTGCATGGATTA
TTCCTCGGACAGCAGCGTCACTCCCTCTGGCAGCCCCTGGGTACGGAGGCGCCGCCNAGC
TGAGATGGGGACACAGGAGAAGAGCCCCAGAGTGAGTCCCCTGCTCTCTCGGAAGATGCA
GACTGCAGATGGGCTACCTGTGGGGGTGCTGAGATTGCCCAGAGGCCCTGACAACACCAG
AGGATTCCATGGCGGACACGAGAGGAGCAGGGCCTATGTTTAAATACCTTCTATTTTTAA
TACCAGCTCCCTTGAAAACCTCCTTTCTTTTCAAGGTTCTGACAAATACCTGGCATGACG
TAGAATGAAATTAAGTCCTCTTTGAAAGATTTTGTATACCTGTAGACCTCTTAATTTATA
TATTTGTAATATATACTTAAATTGCCTGGTATGCTCTGGTTTTAAGACCATCTTCTAGTT
CAGAACACCTGTTCCTCCCAGCATGACCTTTATTTTGATGATGCCTGACATGTGTGAATG
TTGTGGCTCTGCAGGGCTGTGGGACAGAGGCTGCCCAGAGAGGGCCTGACAGAGGCTGTC
TTTCTCGGAGCAAGGTTCTTCTCTTTAGTGACTAAGCTCGCCTCAGTTGGCCATGCAAGG
GCTTCCCCAAAGCCCAGAGGAGTTCTCTTGTTCAACAGCAACTAATTAAGCCAGTAGCAT
GGTGTTTTTATAGGACCAAATGTATGTTTCCTGTCAAGTGAATAAATAATAAAAACACCT
AACTGGGAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCCTGATATCCGGAGGATCAGCAGCCGTTATAGCCAGGTGGGCACCCAAGAGTGTGC
CATTGTGGAGTTTGAAGAGGTGGAAGCCGCCATCAAAGCCCATGAGTTCATGATCTCAGA
GTCTCAGGGCAAAGAGAGCATGAAAGCTGTCCTGATTGGTATGAAGCCACCCAAAAAGAA
ACCATCCAAAGAGAAGAACCAGGATGAAGAGTCCACTTCGAGCATCCACCTGAACAAGTC
CCTGAACAGGAGAGTTGAGGAGCTTCAGTACATGGGGGATGAGTCTTCTGCCAATAGCTC
CTCTGACCCGGAGAGCAACCCCACGTCCCCTCTGGCTGGCCGGAGACACGTGGTCACCAA
CAAGCTCAGCCCTTCTGGCCACCAGAATCTCTTTCTGAGCCCAAATGCCTCCCCGTGCAC
GAGTCCTTGGAACAGCCCCTTGGCTCAACGCAAAGGCATTTCCAGAAAATCCCCACTGGC
CGAAGAAGGTAGGCTGAACTTGAGTGCCAGTCCTGAGATCTTTCGCAAGTGCATGGATTA
TTCCTCGGACAGCAGCGTCACTCCCTCTGGCAGCCCCTGGGTACGGAGGCGCCGCCNAGC
TGAGATGGGGACACAGGAGAAGAGCCCCAGAGTGAGTCCCCTGCTCTCTCGGAAGATGCA
GACTGCAGATGGGCTACCTGTGGGGGTGCTGAGATTGCCCAGAGGCCCTGACAACACCAG
AGGATTCCATGGCGGACACGAGAGGAGCAGGGCCTATGTTTAAATACCTTCTATTTTTAA
TACCAGCTCCCTTGAAAACCTCCTTTCTTTTCAAGGTTCTGACAAATACCTGGCATGACG
TAGAATGAAATTAAGTCCTCTTTGAAAGATTTTGTATACCTGTAGACCTCTTAATTTATA
TATTTGTAATATATACTTAAATTGCCTGGTATGCTCTGGTTTTAAGACCATCTTCTAGTT
CAGAACACCTGTTCCTCCCAGCATGACCTTTATTTTGATGATGCCTGACATGTGTGAATG
TTGTGGCTCTGCAGGGCTGTGGGACAGAGGCTGCCCAGAGAGGGCCTGACAGAGGCTGTC
TTTCTCGGAGCAAGGTTCTTCTCTTTAGTGACTAAGCTCGCCTCAGTTGGCCATGCAAGG
GCTTCCCCAAAGCCCAGAGGAGTTCTCTTGTTCAACAGCAACTAATTAAGCCAGTAGCAT
GGTGTTTTTATAGGACCAAATGTATGTTTCCTGTCAAGTGAATAAATAATAAAAACACCT
AACTGGGAGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C8C8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C8C8_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.735915

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.735915

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1272, gnl|bosTau2|chr10 (12863978-12865241)
               

               
               1-1272, gnl|Hg17|chr15 (68912204-68910933)
               

               
               1-1272, gnl|Mm7|chr9 (60764222-60765472)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1272, gnl|bosTau2|chr10 (12863978-12865241)
               

               
               1-1272, gnl|Hg17|chr15 (68912204-68910933)
               

               
               1-1272, gnl|Mm7|chr9 (60764222-60765472)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sug (0.254582)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               che (0.136314)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               che (0.136314)

	1-1272, gnl\|bosTau2\|chr10 (12863978-12865241)
	1-1272, gnl\|Hg17\|chr15 (68912204-68910933)
	1-1272, gnl\|Mm7\|chr9 (60764222-60765472)