Non-Coding RNA Search

Ss1.1-Pig2-46N03.5

Sequence:


               
               CAGGCCGCAGCTACCCTGACCGAGGTGGCCAACGGCATTGAGCCCCTGGGCGTGAAGCCG
GACCTACCGCCCCCGCCCAGCAAAGCCCCCGTGAAGAAGGAGAACCAGTGGTTTGACGTG
GGCGTCATCAAGGGCACCAACGTGATGGTGACGCACTATTTCCTGCCACCCGATGACGCC
GTGCCGTCGGACGATGACTCCGGCACTGTCCCCGACTACAACCAGCTGAAGAAGCAGGAG
CTGCAGCCGGGCACTGCCTACAAGTTCCGAGTCGCCGGGATCAACGCCTGCGGCCGGGGG
CCGTTCAGCGAGATCTCGGCCTTTAAGACGTGTCTGCCCGGCTTCCCGGGGGCCCCCTGT
GCCATCAAGATCAGCAAAAGTCCCGATGGAGCCCACCTGACCTGGGAGCCGCCCTCCGTG
ACCTCCGGCAAGATCATCGAGTACTCGGTGTACCTGGCCATCCAGAGCTCGCAGGCCGGC
GGCGAGCCCAAGAGCGCCGCCCCGGCCCAGCTGGCCTTCATGCGGGTATACTGCGGGCCC
AGCCCCTCCTGGCTCGTGCAGTCCTCCAGCCTCTCCAACGCCCACATCGACTACACCACC
AAGCCCGCCATCATCTTCCGCATCGCCGCCCGCAACGAGAAGGGCTACGGCCCAGCCACC
CAAGTCAGGTGGTTGCAAGAAACCAGTAAAGACAGCTCTGGCACCAAGCCGGCCAGCAAG
CGGCCCATGTCCTCTCCGGAAATGAAATCCGCTCCAAAGAAGTCGAAGGCAGACGGTCCG
TGAGAGGCCGCCCGGCCCCGGATTCCTCGCCGGCCCCTCCTGCTTCGGGAATGCCACCCG
CCAGGGCCTGCCCGTCACCCACCCAGCGCTCGCCTCACCCTCTCGAGCCCTGGCTGCTCT
TCTCCCTCCCTCTCTCTCTCTCTGTTTTTAAAATGATCTCAAGAAAGCACATTTTACCGT
GGCCGTGGGAGACGGCGGAGGCGGGAAGAGCAGACGCCCTCAGAGGGCGGGACCGAGAAA
CTCACAGGACGAAGGACACGCACAGGACACGGCAGGCGCCTCCGGAGCCTGCAGGCCTCT
TGCTGTTCGTGACCCTTGGATCCGGGGAGCGGCCAAGGCCCAAGGTGGGGGGGCCTGGAA
GCCGAGGATGGGCGCCCCCAGCACCCTCCCGCCTCTGCTGCGAGAGGCTTTTCGGGGCAG
CCAGCACTGGGTGTCTCTCCGGTCCGGTATCTTCCTCTGTTGGCTGAGGTCCCACCACCG
AGCGGCTGCCCCTGCCCAGCAGTCCCCGGGAAGCTGACGCCTTTGCTCAAAGGCCTTCGT
GCTCCCCCTTTTCCTCTGCCCTCTTCTTTCCCACTTAGAGAGAGAGAAAGAGAGAGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCCGCAGCTACCCTGACCGAGGTGGCCAACGGCATTGAGCCCCTGGGCGTGAAGCCG
GACCTACCGCCCCCGCCCAGCAAAGCCCCCGTGAAGAAGGAGAACCAGTGGTTTGACGTG
GGCGTCATCAAGGGCACCAACGTGATGGTGACGCACTATTTCCTGCCACCCGATGACGCC
GTGCCGTCGGACGATGACTCCGGCACTGTCCCCGACTACAACCAGCTGAAGAAGCAGGAG
CTGCAGCCGGGCACTGCCTACAAGTTCCGAGTCGCCGGGATCAACGCCTGCGGCCGGGGG
CCGTTCAGCGAGATCTCGGCCTTTAAGACGTGTCTGCCCGGCTTCCCGGGGGCCCCCTGT
GCCATCAAGATCAGCAAAAGTCCCGATGGAGCCCACCTGACCTGGGAGCCGCCCTCCGTG
ACCTCCGGCAAGATCATCGAGTACTCGGTGTACCTGGCCATCCAGAGCTCGCAGGCCGGC
GGCGAGCCCAAGAGCGCCGCCCCGGCCCAGCTGGCCTTCATGCGGGTATACTGCGGGCCC
AGCCCCTCCTGGCTCGTGCAGTCCTCCAGCCTCTCCAACGCCCACATCGACTACACCACC
AAGCCCGCCATCATCTTCCGCATCGCCGCCCGCAACGAGAAGGGCTACGGCCCAGCCACC
CAAGTCAGGTGGTTGCAAGAAACCAGTAAAGACAGCTCTGGCACCAAGCCGGCCAGCAAG
CGGCCCATGTCCTCTCCGGAAATGAAATCCGCTCCAAAGAAGTCGAAGGCAGACGGTCCG
TGAGAGGCCGCCCGGCCCCGGATTCCTCGCCGGCCCCTCCTGCTTCGGGAATGCCACCCG
CCAGGGCCTGCCCGTCACCCACCCAGCGCTCGCCTCACCCTCTCGAGCCCTGGCTGCTCT
TCTCCCTCCCTCTCTCTCTCTCTGTTTTTAAAATGATCTCAAGAAAGCACATTTTACCGT
GGCCGTGGGAGACGGCGGAGGCGGGAAGAGCAGACGCCCTCAGAGGGCGGGACCGAGAAA
CTCACAGGACGAAGGACACGCACAGGACACGGCAGGCGCCTCCGGAGCCTGCAGGCCTCT
TGCTGTTCGTGACCCTTGGATCCGGGGAGCGGCCAAGGCCCAAGGTGGGGGGGCCTGGAA
GCCGAGGATGGGCGCCCCCAGCACCCTCCCGCCTCTGCTGCGAGAGGCTTTTCGGGGCAG
CCAGCACTGGGTGTCTCTCCGGTCCGGTATCTTCCTCTGTTGGCTGAGGTCCCACCACCG
AGCGGCTGCCCCTGCCCAGCAGTCCCCGGGAAGCTGACGCCTTTGCTCAAAGGCCTTCGT
GCTCCCCCTTTTCCTCTGCCCTCTTCTTTCCCACTTAGAGAGAGAGAAAGAGAGAGAGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               193-312, - strand, RNAz p=0.686021
               

               
               539-658, - strand, RNAz p=0.543806

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-312, - strand, RNAz p=0.686021
               

               
               539-658, - strand, RNAz p=0.543806

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               574-678, - strand, RNAmicro p=0.968523

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               574-678, - strand, RNAmicro p=0.968523

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               193-378, gnl|bosTau2|chr7 (6328204-6328019)
               

               
               193-378, gnl|canFam2|chrX (124838132-124838324)
               

               
               193-378, gnl|danRer3|chr11 (25701516-25701707)
               

               
               193-378, gnl|dasNov1|scaffold_35974 (17548-17356)
               

               
               193-378, gnl|echTel1|scaffold_307943 (13949-13757)
               

               
               193-378, gnl|fr1|chrUn (4151654-4151846)
               

               
               193-378, gnl|galGal2|chr1 (51368823-51368998)
               

               
               193-378, gnl|hg17|chrX (152737107-152737299)
               

               
               193-378, gnl|Hg17|chrX (152737296-152737111)
               

               
               193-378, gnl|loxAfr1|scaffold_22468 (23959-23782)
               

               
               193-378, gnl|mm7|chrX (69332769-69332961)
               

               
               193-378, gnl|Mm7|chrX (69332958-69332773)
               

               
               193-378, gnl|monDom2|scaffold_216 (61801-61993)
               

               
               193-378, gnl|oryCun1|scaffold_214775 (36370-36178)
               

               
               193-378, gnl|panTro1|chrX (158055561-158055730)
               

               
               193-378, gnl|rheMac2|chr11 (105220424-105220249)
               

               
               193-378, gnl|rn3|chrX (159954594-159954786)
               

               
               193-378, gnl|tetNig1|chr11 (9263127-9263319)
               

               
               193-378, gnl|xenTro1|scaffold_257 (436431-436239)
               


               
               379-679, gnl|bosTau2|chr7 (6327443-6327143)
               

               
               379-679, gnl|Hg17|chrX (152736841-152736541)
               

               
               379-679, gnl|Mm7|chrX (69332082-69331782)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-378, gnl|bosTau2|chr7 (6328204-6328019)
               

               
               193-378, gnl|canFam2|chrX (124838132-124838324)
               

               
               193-378, gnl|danRer3|chr11 (25701516-25701707)
               

               
               193-378, gnl|dasNov1|scaffold_35974 (17548-17356)
               

               
               193-378, gnl|echTel1|scaffold_307943 (13949-13757)
               

               
               193-378, gnl|fr1|chrUn (4151654-4151846)
               

               
               193-378, gnl|galGal2|chr1 (51368823-51368998)
               

               
               193-378, gnl|hg17|chrX (152737107-152737299)
               

               
               193-378, gnl|Hg17|chrX (152737296-152737111)
               

               
               193-378, gnl|loxAfr1|scaffold_22468 (23959-23782)
               

               
               193-378, gnl|mm7|chrX (69332769-69332961)
               

               
               193-378, gnl|Mm7|chrX (69332958-69332773)
               

               
               193-378, gnl|monDom2|scaffold_216 (61801-61993)
               

               
               193-378, gnl|oryCun1|scaffold_214775 (36370-36178)
               

               
               193-378, gnl|panTro1|chrX (158055561-158055730)
               

               
               193-378, gnl|rheMac2|chr11 (105220424-105220249)
               

               
               193-378, gnl|rn3|chrX (159954594-159954786)
               

               
               193-378, gnl|tetNig1|chr11 (9263127-9263319)
               

               
               193-378, gnl|xenTro1|scaffold_257 (436431-436239)
               


               
               379-679, gnl|bosTau2|chr7 (6327443-6327143)
               

               
               379-679, gnl|Hg17|chrX (152736841-152736541)
               

               
               379-679, gnl|Mm7|chrX (69332082-69331782)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	193-312, - strand, RNAz p=0.686021
	539-658, - strand, RNAz p=0.543806

	193-378, gnl\|bosTau2\|chr7 (6328204-6328019)
	193-378, gnl\|canFam2\|chrX (124838132-124838324)
	193-378, gnl\|danRer3\|chr11 (25701516-25701707)
	193-378, gnl\|dasNov1\|scaffold_35974 (17548-17356)
	193-378, gnl\|echTel1\|scaffold_307943 (13949-13757)
	193-378, gnl\|fr1\|chrUn (4151654-4151846)
	193-378, gnl\|galGal2\|chr1 (51368823-51368998)
	193-378, gnl\|hg17\|chrX (152737107-152737299)
	193-378, gnl\|Hg17\|chrX (152737296-152737111)
	193-378, gnl\|loxAfr1\|scaffold_22468 (23959-23782)
	193-378, gnl\|mm7\|chrX (69332769-69332961)
	193-378, gnl\|Mm7\|chrX (69332958-69332773)
	193-378, gnl\|monDom2\|scaffold_216 (61801-61993)
	193-378, gnl\|oryCun1\|scaffold_214775 (36370-36178)
	193-378, gnl\|panTro1\|chrX (158055561-158055730)
	193-378, gnl\|rheMac2\|chr11 (105220424-105220249)
	193-378, gnl\|rn3\|chrX (159954594-159954786)
	193-378, gnl\|tetNig1\|chr11 (9263127-9263319)
	193-378, gnl\|xenTro1\|scaffold_257 (436431-436239)

	379-679, gnl\|bosTau2\|chr7 (6327443-6327143)
	379-679, gnl\|Hg17\|chrX (152736841-152736541)
	379-679, gnl\|Mm7\|chrX (69332082-69331782)