Ss1.1-Pig2-46P09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGATGCATCGAGCAGTGTCTCCAACAGAGCCCACTCCAAGATCTCTCTCGGCCTTGTCTG CCTATCACACTGGCTTGATTGCGCCCATGAAGATCCGCACCGAGGCCCCCGGGAACCTGC GTTTGTACAGCGGGAGCCCCACACGCAGCGAGAAGGAGCAGCTCTCGGTCAGCTCCTTCT ACTACAAGGAGCGGAAATCGAGGAGATGGAAAAGTAAGCGGGAGGGCTCGGACGCTGGCA ATCGACCCATCAAGGCTGCTGGGAAAGTGATCATTCAGGATATCGCCTGCCTTCTTCCTG TTCACAAGTCCCTGGGAGAACTGTACATATTGAATGTGAATGATATTCAAGAAACGTGTC AGAAGAACGCCACTTCTGCCTTGCTTGTCGGAAGGAAGGATCTTGTCCAGGTTTGGTCAC TGGCTACAGTAGCTACGGATCTTTGCCTTGGTCCGAAGTCTGACCCAGATTTGGAAACAC CCTGGGCTCGACATCCATTTGGGCGACAGCTGCTGGAGTCCCTGTTGGCTCATTACTGCC GGCTCCGGGACGTGCAGACACTGGCCATGCTGTGCAGCGTGTTTGAAGCCCAGTCCCGGC CGCAGGGGGTGCCAAACCCCTTTGGGCCTTTTCCCAGCCGCTCCTCTAACCTTGTGGTGT CTCACAGCCGATACCCCAGCTTTACTTCCTCTGGTTCCTGCTCAAGCATGTCCGACCCAG GGTTCAACACCAGTGGCTGGAACATAGCGGGCAGAGAGACAGAACACATGTCTTCCCCTT GGGGAGAGTCTTCACCAGAAGAAATCCGCTTTGGGAGTCTGACCTACAGCGATCCTCGGG AGCGCGAACGTGACCAGCACGATAAAAATAAAAGGCTTCTGGACCCGGCTAACACCCAGC AGTTTGATGACTTTAAGAAGTGCTATGGAGAAATCCTCTACCGCTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGATGCATCGAGCAGTGTCTCCAACAGAGCCCACTCCAAGATCTCTCTCGGCCTTGTCTG CCTATCACACTGGCTTGATTGCGCCCATGAAGATCCGCACCGAGGCCCCCGGGAACCTGC GTTTGTACAGCGGGAGCCCCACACGCAGCGAGAAGGAGCAGCTCTCGGTCAGCTCCTTCT ACTACAAGGAGCGGAAATCGAGGAGATGGAAAAGTAAGCGGGAGGGCTCGGACGCTGGCA ATCGACCCATCAAGGCTGCTGGGAAAGTGATCATTCAGGATATCGCCTGCCTTCTTCCTG TTCACAAGTCCCTGGGAGAACTGTACATATTGAATGTGAATGATATTCAAGAAACGTGTC AGAAGAACGCCACTTCTGCCTTGCTTGTCGGAAGGAAGGATCTTGTCCAGGTTTGGTCAC TGGCTACAGTAGCTACGGATCTTTGCCTTGGTCCGAAGTCTGACCCAGATTTGGAAACAC CCTGGGCTCGACATCCATTTGGGCGACAGCTGCTGGAGTCCCTGTTGGCTCATTACTGCC GGCTCCGGGACGTGCAGACACTGGCCATGCTGTGCAGCGTGTTTGAAGCCCAGTCCCGGC CGCAGGGGGTGCCAAACCCCTTTGGGCCTTTTCCCAGCCGCTCCTCTAACCTTGTGGTGT CTCACAGCCGATACCCCAGCTTTACTTCCTCTGGTTCCTGCTCAAGCATGTCCGACCCAG GGTTCAACACCAGTGGCTGGAACATAGCGGGCAGAGAGACAGAACACATGTCTTCCCCTT GGGGAGAGTCTTCACCAGAAGAAATCCGCTTTGGGAGTCTGACCTACAGCGATCCTCGGG AGCGCGAACGTGACCAGCACGATAAAAATAAAAGGCTTCTGGACCCGGCTAACACCCAGC AGTTTGATGACTTTAAGAAGTGCTATGGAGAAATCCTCTACCGCTGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 77-194, - strand, RNAz p=0.969384 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 77-194, - strand, RNAz p=0.969384 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 39-194, gnl|bosTau2|chr18 (1167700-1167545) | |
| 39-194, gnl|canFam2|chr5 (78779847-78779722) | |
| 39-194, gnl|danRer3|chr21 (31544247-31544371) | |
| 39-194, gnl|dasNov1|scaffold_5987 (40443-40318) | |
| 39-194, gnl|echTel1|scaffold_201896 (1061-937) | |
| 39-194, gnl|fr1|chrUn (105531322-105531198) | |
| 39-194, gnl|galGal2|chr11 (1827644-1827769) | |
| 39-194, gnl|hg17|chr16 (73495341-73495466) | |
| 39-194, gnl|Hg17|chr16 (73495501-73495346) | |
| 39-194, gnl|loxAfr1|scaffold_322 (115482-115357) | |
| 39-194, gnl|mm7|chr8 (110076084-110076209) | |
| 39-194, gnl|Mm7|chr8 (110076244-110076089) | |
| 39-194, gnl|monDom2|scaffold_63 (10526003-10526128) | |
| 39-194, gnl|oryCun1|scaffold_150320 (11250-11125) | |
| 39-194, gnl|panTro1|chr18 (67886167-67886292) | |
| 39-194, gnl|rheMac2|chr20 (73005076-73005201) | |
| 39-194, gnl|rn3|chr19 (41402783-41402908) | |
| 39-194, gnl|tetNig1|chrUn_random (6370109-6370233) | |
| 39-194, gnl|xenTro1|scaffold_387 (451206-451331) | |
| 526-673, gnl|bosTau2|chr18 (1151662-1151515) | |
| 526-673, gnl|Hg17|chr16 (73479716-73479569) | |
| 526-673, gnl|Mm7|chr8 (110060955-110060808) | |
| 746-875, gnl|bosTau2|chr18 (1150095-1149966) | |
| 746-875, gnl|canFam2|chr5 (78807826-78807724) | |
| 746-875, gnl|danRer3|chrNA (39628956-39628856) | |
| 746-875, gnl|echTel1|scaffold_206509 (5371-5269) | |
| 746-875, gnl|fr1|chrUn (105534318-105534216) | |
| 746-875, gnl|galGal2|chr11 (1812593-1812694) | |
| 746-875, gnl|hg17|chr16 (73477667-73477769) | |
| 746-875, gnl|Hg17|chr16 (73477797-73477668) | |
| 746-875, gnl|loxAfr1|scaffold_216344 (587-690) | |
| 746-875, gnl|mm7|chr8 (110058966-110059068) | |
| 746-875, gnl|Mm7|chr8 (110059096-110058967) | |
| 746-875, gnl|monDom2|scaffold_63 (10509783-10509885) | |
| 746-875, gnl|oryCun1|scaffold_212306 (40200-40098) | |
| 746-875, gnl|panTro1|chr18 (67868416-67868518) | |
| 746-875, gnl|rheMac2|chr20 (72987042-72987144) | |
| 746-875, gnl|rn3|chr19 (41386554-41386656) | |
| 746-875, gnl|tetNig1|chrUn_random (6368047-6368149) | |
| 746-875, gnl|xenTro1|scaffold_387 (440003-440105) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-194, gnl|bosTau2|chr18 (1167700-1167545) | |
| 39-194, gnl|canFam2|chr5 (78779847-78779722) | |
| 39-194, gnl|danRer3|chr21 (31544247-31544371) | |
| 39-194, gnl|dasNov1|scaffold_5987 (40443-40318) | |
| 39-194, gnl|echTel1|scaffold_201896 (1061-937) | |
| 39-194, gnl|fr1|chrUn (105531322-105531198) | |
| 39-194, gnl|galGal2|chr11 (1827644-1827769) | |
| 39-194, gnl|hg17|chr16 (73495341-73495466) | |
| 39-194, gnl|Hg17|chr16 (73495501-73495346) | |
| 39-194, gnl|loxAfr1|scaffold_322 (115482-115357) | |
| 39-194, gnl|mm7|chr8 (110076084-110076209) | |
| 39-194, gnl|Mm7|chr8 (110076244-110076089) | |
| 39-194, gnl|monDom2|scaffold_63 (10526003-10526128) | |
| 39-194, gnl|oryCun1|scaffold_150320 (11250-11125) | |
| 39-194, gnl|panTro1|chr18 (67886167-67886292) | |
| 39-194, gnl|rheMac2|chr20 (73005076-73005201) | |
| 39-194, gnl|rn3|chr19 (41402783-41402908) | |
| 39-194, gnl|tetNig1|chrUn_random (6370109-6370233) | |
| 39-194, gnl|xenTro1|scaffold_387 (451206-451331) | |
| 526-673, gnl|bosTau2|chr18 (1151662-1151515) | |
| 526-673, gnl|Hg17|chr16 (73479716-73479569) | |
| 526-673, gnl|Mm7|chr8 (110060955-110060808) | |
| 746-875, gnl|bosTau2|chr18 (1150095-1149966) | |
| 746-875, gnl|canFam2|chr5 (78807826-78807724) | |
| 746-875, gnl|danRer3|chrNA (39628956-39628856) | |
| 746-875, gnl|echTel1|scaffold_206509 (5371-5269) | |
| 746-875, gnl|fr1|chrUn (105534318-105534216) | |
| 746-875, gnl|galGal2|chr11 (1812593-1812694) | |
| 746-875, gnl|hg17|chr16 (73477667-73477769) | |
| 746-875, gnl|Hg17|chr16 (73477797-73477668) | |
| 746-875, gnl|loxAfr1|scaffold_216344 (587-690) | |
| 746-875, gnl|mm7|chr8 (110058966-110059068) | |
| 746-875, gnl|Mm7|chr8 (110059096-110058967) | |
| 746-875, gnl|monDom2|scaffold_63 (10509783-10509885) | |
| 746-875, gnl|oryCun1|scaffold_212306 (40200-40098) | |
| 746-875, gnl|panTro1|chr18 (67868416-67868518) | |
| 746-875, gnl|rheMac2|chr20 (72987042-72987144) | |
| 746-875, gnl|rn3|chr19 (41386554-41386656) | |
| 746-875, gnl|tetNig1|chrUn_random (6368047-6368149) | |
| 746-875, gnl|xenTro1|scaffold_387 (440003-440105) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |