Ss1.1-Pig2-47C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGCGCCCCATTGCAAAGGACTGATTGAGTGGGAAGGACGGGGACCTAGCTTGATCTG ACTCCAGAGCCTTCAGCAGGGAAGAAAAATGTCAGATGAAGAGGATCTGGAAGACTTTGA GCCAGACCTGGACGATCTGGAAAGGGAAGATGACGAGAAGGAGATAGAAGAGTGGGAGGA CTACAGGAAGGAGGGAGAAGAAGAGTCCGAGGAATGGGTATCCACTCCCCTCACGGAGGA CATGATGAAGGAAGGGCTTTCTTTGCTCTGCAAAACCGGTAATGGACTGGCCCATGCTTA CGTCAAGCTGGAGGTTAAAGACAGGGATCTGACAGACATCTACTTGCTGCATTCCTACAT CCACCTGCGCTACGTGGATATTTCTGAAAACCACTTGACAGACTTGTCTCCGCTCAATTA CCTCACTCACCTGCTCTGGCTGAAAGCTGATGGCAACCAACTGCGGAGTGCCCGGCTGAA CGAACTGCCATACCTGCAGATTGCCAGCTTTGCCTATAATCAGATCACTGACACTGAGGG CATCTCTCATCCTCGTCTGGCCAGCCTGGATCTCAAAGGGAACCGCATCCACACGGTGAC GGGTCTGGACCCCCAAAAGCTGATCAGCCTGCACACCCTGGAGCTTCGGGGCAACCAACT GAGCAGCACCCTGGGAATCAACCTTCCTAAGCTGAAAAACCTCTTCCTGGCCCAGAACAT GTTGAAGAAGGTGGAAGGTTTGGAGAACCTAAGCAATCTCACTACCTTGCATCTTCGGGA CAACCAGATTGACACTCTGAGTGGCTTCTCCAAGGAAATGAAATCACTGCAGTACCTCAA CCTAAGGGGCAACATGGTGACCGACCTGGGGGAGCTAGCCAAGCTGCAGGACCTGCCCAA GCTGCGAGCCCTGGTGCTGCTGGACAACCCGTGTGCAGACGAGAGTGACTACCGCCAGGA GGCCCTGGTGCAGTTGGCACACCTCGAGCGCCTGGACAAGGACTTCTATGAGGAGGAGGA GCGGGCTGAGGCCGATGAGATCCGGCAGAGGATGAAGGAGGAGCAGGAGCAGGAGGCTGA GCCCGAGGCTGAATCGGAACTGGACCAGTCATCCATCTAGAGACTAAAGATGCTGGTCCC AGGACTGAGAAGATTCCCAGCTGGGGGGGCTGCCACATGTACACTCCTCATGAGACAGGT GATGGCTTCTTTTGCCTAGGCCCTGGGGTGCCTAGGCAAGTGGCAGCCCTCAGGCAGGTC TGATGGGAGCCAGGCCCGTTTGGGCTGAAAGGATGCTGGAAGAATTGGCTACAGAGGAGC TGCGGAGGTGGCAGTCTGGGGTATTAGGAACAGTTTGGTTTTCCAATAAAGAGCGTTTTG ATAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGCGCCCCATTGCAAAGGACTGATTGAGTGGGAAGGACGGGGACCTAGCTTGATCTG ACTCCAGAGCCTTCAGCAGGGAAGAAAAATGTCAGATGAAGAGGATCTGGAAGACTTTGA GCCAGACCTGGACGATCTGGAAAGGGAAGATGACGAGAAGGAGATAGAAGAGTGGGAGGA CTACAGGAAGGAGGGAGAAGAAGAGTCCGAGGAATGGGTATCCACTCCCCTCACGGAGGA CATGATGAAGGAAGGGCTTTCTTTGCTCTGCAAAACCGGTAATGGACTGGCCCATGCTTA CGTCAAGCTGGAGGTTAAAGACAGGGATCTGACAGACATCTACTTGCTGCATTCCTACAT CCACCTGCGCTACGTGGATATTTCTGAAAACCACTTGACAGACTTGTCTCCGCTCAATTA CCTCACTCACCTGCTCTGGCTGAAAGCTGATGGCAACCAACTGCGGAGTGCCCGGCTGAA CGAACTGCCATACCTGCAGATTGCCAGCTTTGCCTATAATCAGATCACTGACACTGAGGG CATCTCTCATCCTCGTCTGGCCAGCCTGGATCTCAAAGGGAACCGCATCCACACGGTGAC GGGTCTGGACCCCCAAAAGCTGATCAGCCTGCACACCCTGGAGCTTCGGGGCAACCAACT GAGCAGCACCCTGGGAATCAACCTTCCTAAGCTGAAAAACCTCTTCCTGGCCCAGAACAT GTTGAAGAAGGTGGAAGGTTTGGAGAACCTAAGCAATCTCACTACCTTGCATCTTCGGGA CAACCAGATTGACACTCTGAGTGGCTTCTCCAAGGAAATGAAATCACTGCAGTACCTCAA CCTAAGGGGCAACATGGTGACCGACCTGGGGGAGCTAGCCAAGCTGCAGGACCTGCCCAA GCTGCGAGCCCTGGTGCTGCTGGACAACCCGTGTGCAGACGAGAGTGACTACCGCCAGGA GGCCCTGGTGCAGTTGGCACACCTCGAGCGCCTGGACAAGGACTTCTATGAGGAGGAGGA GCGGGCTGAGGCCGATGAGATCCGGCAGAGGATGAAGGAGGAGCAGGAGCAGGAGGCTGA GCCCGAGGCTGAATCGGAACTGGACCAGTCATCCATCTAGAGACTAAAGATGCTGGTCCC AGGACTGAGAAGATTCCCAGCTGGGGGGGCTGCCACATGTACACTCCTCATGAGACAGGT GATGGCTTCTTTTGCCTAGGCCCTGGGGTGCCTAGGCAAGTGGCAGCCCTCAGGCAGGTC TGATGGGAGCCAGGCCCGTTTGGGCTGAAAGGATGCTGGAAGAATTGGCTACAGAGGAGC TGCGGAGGTGGCAGTCTGGGGTATTAGGAACAGTTTGGTTTTCCAATAAAGAGCGTTTTG ATAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 37-213, gnl|bosTau2|chr5 (60364410-60364237) | |
| 37-213, gnl|Hg17|chr12 (6885008-6885183) | |
| 37-213, gnl|Mm7|chr6 (124805569-124805405) | |
| 323-579, gnl|bosTau2|chr5 (60363593-60363337) | |
| 323-579, gnl|canFam2|chr27 (41162221-41162051) | |
| 323-579, gnl|danRer3|chr23 (22099339-22099515) | |
| 323-579, gnl|dasNov1|scaffold_5223 (73847-74017) | |
| 323-579, gnl|echTel1|scaffold_138917 (174-4) | |
| 323-579, gnl|galGal2|chr1 (71368565-71368735) | |
| 323-579, gnl|hg17|chr12 (6885826-6885996) | |
| 323-579, gnl|Hg17|chr12 (6885832-6886088) | |
| 323-579, gnl|loxAfr1|scaffold_34183 (8198-8029) | |
| 323-579, gnl|mm7|chr6 (124804747-124804577) | |
| 323-579, gnl|Mm7|chr6 (124804739-124804483) | |
| 323-579, gnl|monDom2|scaffold_31 (15421473-15421643) | |
| 323-579, gnl|panTro1|chr10 (7423039-7423209) | |
| 323-579, gnl|rheMac2|chr11 (7091953-7092123) | |
| 323-579, gnl|rn3|chr4 (161152842-161152672) | |
| 323-579, gnl|xenTro1|scaffold_811 (458435-458262) | |
| 845-1120, gnl|bosTau2|chr5 (60358753-60358478) | |
| 845-1120, gnl|canFam2|chr27 (41158471-41158245) | |
| 845-1120, gnl|danRer3|chr23 (22101635-22101862) | |
| 845-1120, gnl|dasNov1|scaffold_5223 (77139-77343) | |
| 845-1120, gnl|echTel1|scaffold_261866 (5048-5265) | |
| 845-1120, gnl|galGal2|chr1 (71374608-71374840) | |
| 845-1120, gnl|hg17|chr12 (6892118-6892341) | |
| 845-1120, gnl|Hg17|chr12 (6892153-6892428) | |
| 845-1120, gnl|loxAfr1|scaffold_34183 (4395-4172) | |
| 845-1120, gnl|mm7|chr6 (124797305-124797080) | |
| 845-1120, gnl|Mm7|chr6 (124797266-124796991) | |
| 845-1120, gnl|monDom2|scaffold_31 (15427004-15427211) | |
| 845-1120, gnl|panTro1|chr10 (7429744-7429967) | |
| 845-1120, gnl|rheMac2|chr11 (7098869-7099092) | |
| 845-1120, gnl|rn3|chr4 (161145380-161145158) | |
| 845-1120, gnl|xenTro1|scaffold_811 (452530-452312) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-213, gnl|bosTau2|chr5 (60364410-60364237) | |
| 37-213, gnl|Hg17|chr12 (6885008-6885183) | |
| 37-213, gnl|Mm7|chr6 (124805569-124805405) | |
| 323-579, gnl|bosTau2|chr5 (60363593-60363337) | |
| 323-579, gnl|canFam2|chr27 (41162221-41162051) | |
| 323-579, gnl|danRer3|chr23 (22099339-22099515) | |
| 323-579, gnl|dasNov1|scaffold_5223 (73847-74017) | |
| 323-579, gnl|echTel1|scaffold_138917 (174-4) | |
| 323-579, gnl|galGal2|chr1 (71368565-71368735) | |
| 323-579, gnl|hg17|chr12 (6885826-6885996) | |
| 323-579, gnl|Hg17|chr12 (6885832-6886088) | |
| 323-579, gnl|loxAfr1|scaffold_34183 (8198-8029) | |
| 323-579, gnl|mm7|chr6 (124804747-124804577) | |
| 323-579, gnl|Mm7|chr6 (124804739-124804483) | |
| 323-579, gnl|monDom2|scaffold_31 (15421473-15421643) | |
| 323-579, gnl|panTro1|chr10 (7423039-7423209) | |
| 323-579, gnl|rheMac2|chr11 (7091953-7092123) | |
| 323-579, gnl|rn3|chr4 (161152842-161152672) | |
| 323-579, gnl|xenTro1|scaffold_811 (458435-458262) | |
| 845-1120, gnl|bosTau2|chr5 (60358753-60358478) | |
| 845-1120, gnl|canFam2|chr27 (41158471-41158245) | |
| 845-1120, gnl|danRer3|chr23 (22101635-22101862) | |
| 845-1120, gnl|dasNov1|scaffold_5223 (77139-77343) | |
| 845-1120, gnl|echTel1|scaffold_261866 (5048-5265) | |
| 845-1120, gnl|galGal2|chr1 (71374608-71374840) | |
| 845-1120, gnl|hg17|chr12 (6892118-6892341) | |
| 845-1120, gnl|Hg17|chr12 (6892153-6892428) | |
| 845-1120, gnl|loxAfr1|scaffold_34183 (4395-4172) | |
| 845-1120, gnl|mm7|chr6 (124797305-124797080) | |
| 845-1120, gnl|Mm7|chr6 (124797266-124796991) | |
| 845-1120, gnl|monDom2|scaffold_31 (15427004-15427211) | |
| 845-1120, gnl|panTro1|chr10 (7429744-7429967) | |
| 845-1120, gnl|rheMac2|chr11 (7098869-7099092) | |
| 845-1120, gnl|rn3|chr4 (161145380-161145158) | |
| 845-1120, gnl|xenTro1|scaffold_811 (452530-452312) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.372787) | |
| cki (0.165235) |