Non-Coding RNA Search

Ss1.1-Pig2-47F08.5

Sequence:


               
               AGCTGCCACAGGCCTTGGGGAGTTTCCTAGCCTGTTACACAAGTTGTTTAGAATGTGAGG
TTTGGTCAATAAACCAGTGCACGCTTGGCCACCCTCGCCATTTCTGCCCCCAGGGTCTCA
GGCTCCCTTTTTGACCTGGTGAGGGCCCTTGGTTGCTTTCCTTACTGCATTTCTAGGAGG
CTGCCCCTTCTACTGGGGTATCCATTTCCTTCCTGAGGCTGGGGATTGACCGATGTCTCC
CAGGTCACTCAGCCAGTGAGGTGGGGGCTGGACTGGACTCCTGTCCTCTTCTTTACCCCC
TGCCAGGTGCAGAGCTGGAGGCCAGCATCAGGGTCAAAAGAGTGGCTCAGCATTAAGCAC
TGGCCAACTATTGGCCTCTCTGGGCCTGGGAGAGGAGTGAGGCAAGTCTGTGGGTTTCCT
GGAGCAGTGGGCTTGCCAGCCACGGGTGTTAAGCCTCTAGATTCCAAATGCAGAAACCCA
GCCAGGGAGCATTAAGTATGGACGGTGACTAAGCCAAGCTACTTTTTGAGCTGCTTGCAG
CTCTCCAAGAGCCAGAGATAAAATGTGCTGCATTTTTGCCCCGATTCTTAGGTTTCCTGC
TCCCCTGCCACCGTAGTGATCCTTACAGAGGTTGTTTTCTTGACTTGATATTAAATCTCA
GTTTGAGGCCTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCCACAGGCCTTGGGGAGTTTCCTAGCCTGTTACACAAGTTGTTTAGAATGTGAGG
TTTGGTCAATAAACCAGTGCACGCTTGGCCACCCTCGCCATTTCTGCCCCCAGGGTCTCA
GGCTCCCTTTTTGACCTGGTGAGGGCCCTTGGTTGCTTTCCTTACTGCATTTCTAGGAGG
CTGCCCCTTCTACTGGGGTATCCATTTCCTTCCTGAGGCTGGGGATTGACCGATGTCTCC
CAGGTCACTCAGCCAGTGAGGTGGGGGCTGGACTGGACTCCTGTCCTCTTCTTTACCCCC
TGCCAGGTGCAGAGCTGGAGGCCAGCATCAGGGTCAAAAGAGTGGCTCAGCATTAAGCAC
TGGCCAACTATTGGCCTCTCTGGGCCTGGGAGAGGAGTGAGGCAAGTCTGTGGGTTTCCT
GGAGCAGTGGGCTTGCCAGCCACGGGTGTTAAGCCTCTAGATTCCAAATGCAGAAACCCA
GCCAGGGAGCATTAAGTATGGACGGTGACTAAGCCAAGCTACTTTTTGAGCTGCTTGCAG
CTCTCCAAGAGCCAGAGATAAAATGTGCTGCATTTTTGCCCCGATTCTTAGGTTTCCTGC
TCCCCTGCCACCGTAGTGATCCTTACAGAGGTTGTTTTCTTGACTTGATATTAAATCTCA
GTTTGAGGCCTTAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               462-576, - strand, RNAz p=0.558377

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               462-576, - strand, RNAz p=0.558377

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-343, gnl|bosTau2|chr19 (13376413-13376078)
               

               
               1-343, gnl|Hg17|chr17 (23699015-23698618)
               

               
               1-343, gnl|Mm7|chr11 (78603689-78604040)
               


               
               393-601, gnl|bosTau2|chr19 (13376083-13375865)
               

               
               393-601, gnl|canFam2|chr9 (45923549-45923698)
               

               
               393-601, gnl|dasNov1|scaffold_32457 (4273-4383)
               

               
               393-601, gnl|hg17|chr17 (23698409-23698560)
               

               
               393-601, gnl|Hg17|chr17 (23698623-23698408)
               

               
               393-601, gnl|loxAfr1|scaffold_60109 (36992-36822)
               

               
               393-601, gnl|mm7|chr11 (78604247-78604100)
               

               
               393-601, gnl|Mm7|chr11 (78604035-78604250)
               

               
               393-601, gnl|oryCun1|scaffold_205879 (44546-44677)
               

               
               393-601, gnl|panTro1|chr19 (27035957-27036107)
               

               
               393-601, gnl|rheMac2|chr16 (23530035-23530185)
               

               
               393-601, gnl|rn3|chr10 (64645579-64645434)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-343, gnl|bosTau2|chr19 (13376413-13376078)
               

               
               1-343, gnl|Hg17|chr17 (23699015-23698618)
               

               
               1-343, gnl|Mm7|chr11 (78603689-78604040)
               


               
               393-601, gnl|bosTau2|chr19 (13376083-13375865)
               

               
               393-601, gnl|canFam2|chr9 (45923549-45923698)
               

               
               393-601, gnl|dasNov1|scaffold_32457 (4273-4383)
               

               
               393-601, gnl|hg17|chr17 (23698409-23698560)
               

               
               393-601, gnl|Hg17|chr17 (23698623-23698408)
               

               
               393-601, gnl|loxAfr1|scaffold_60109 (36992-36822)
               

               
               393-601, gnl|mm7|chr11 (78604247-78604100)
               

               
               393-601, gnl|Mm7|chr11 (78604035-78604250)
               

               
               393-601, gnl|oryCun1|scaffold_205879 (44546-44677)
               

               
               393-601, gnl|panTro1|chr19 (27035957-27036107)
               

               
               393-601, gnl|rheMac2|chr16 (23530035-23530185)
               

               
               393-601, gnl|rn3|chr10 (64645579-64645434)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               hlv (0.417769)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.417769)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)

	1-343, gnl\|bosTau2\|chr19 (13376413-13376078)
	1-343, gnl\|Hg17\|chr17 (23699015-23698618)
	1-343, gnl\|Mm7\|chr11 (78603689-78604040)

	393-601, gnl\|bosTau2\|chr19 (13376083-13375865)
	393-601, gnl\|canFam2\|chr9 (45923549-45923698)
	393-601, gnl\|dasNov1\|scaffold_32457 (4273-4383)
	393-601, gnl\|hg17\|chr17 (23698409-23698560)
	393-601, gnl\|Hg17\|chr17 (23698623-23698408)
	393-601, gnl\|loxAfr1\|scaffold_60109 (36992-36822)
	393-601, gnl\|mm7\|chr11 (78604247-78604100)
	393-601, gnl\|Mm7\|chr11 (78604035-78604250)
	393-601, gnl\|oryCun1\|scaffold_205879 (44546-44677)
	393-601, gnl\|panTro1\|chr19 (27035957-27036107)
	393-601, gnl\|rheMac2\|chr16 (23530035-23530185)
	393-601, gnl\|rn3\|chr10 (64645579-64645434)

	hlv (0.417769)
	hea (0.204499)
	nbm (0.198649)
	eye (0.170503)
	hyp (0.142837)