Non-Coding RNA Search

Ss1.1-Pig2-47G16.5

Sequence:


               
               GCAGTGCACAAGTGGACAAGCCCATCCGTGTGTGTTGTGCCCTCTCTGGATGCTGGGGAT
GTTATGTTCTCTTAAATGCCCTGTGACACTGACCCAGCCATTTGCCCGCAAAAGCGGGGA
CCCAGGCAGGGTTGGTCCCTGGGAGGCTGAGGGGGCCCCTCGGCAGAGATCCAGGGTAGG
TTCGGCAACAGCCACAGTCCCCAGTGCCAGACCGGCCCACTGTCCTACAGCCGCCACACC
TGACACCCGCCATAGACACCCAGTGTCTGCCCAGCCTAGAGACCAGGCAGATCCAAAGAC
GCGAGATCTTGGTGGCTTTTCAGCAGAGGAAACAGACCAGGACTCCTGGGGCCGTGGTGT
AGCCTGCCAGGCCGGCCAGGGCAAGGCCACCCCTGCGGGGGTGTGTTTGGCTTTGCGGAA
TCCTACCTTCTCAGCATCCTGGGACTGGGCCCGACTCACTAAGGGAATCTGCTGTCCTGG
GCCCGGTGGTCCTCTCAGCCTACAGCCTGTCCAGAAAGCTGGGCCTCGTGGCCTGCAGGA
GACTGGGTCAAGGGGCTCACATAGGTCCCTTGGATCTTTGTTTTGTGACCCCGCCAGCCC
TGGTTGGCCTTTGACCGATCGATGCTTCCCAAACTGGCCCTGCAGCCCCTGGCCCCACCT
GCCACAAGGGAGGCCCTGCTGGGCGTGGAGGCCTGGCTGCCTTTCTAGCCGGTCACACTG
GGGAATCCCCCCTGCTGGCCTCCACCCAGAATGCCCGGCACGCCTCCTGGCACTCATCCA
CTTTCCTGGGCCCTCTTCCAGCAGACCGCAGGCTTTGGCAGCGGGAGGATGGGTGCCTGG
GGGGCCCAGCCCCTTCCCACGGCTCTTCTGGCCCCCAGCAGGGGGATGGGGTGGCAGAGA
CCAATTCCGTTTAACATGGAAATAAAAGATCCCTTTACTGGCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTGCACAAGTGGACAAGCCCATCCGTGTGTGTTGTGCCCTCTCTGGATGCTGGGGAT
GTTATGTTCTCTTAAATGCCCTGTGACACTGACCCAGCCATTTGCCCGCAAAAGCGGGGA
CCCAGGCAGGGTTGGTCCCTGGGAGGCTGAGGGGGCCCCTCGGCAGAGATCCAGGGTAGG
TTCGGCAACAGCCACAGTCCCCAGTGCCAGACCGGCCCACTGTCCTACAGCCGCCACACC
TGACACCCGCCATAGACACCCAGTGTCTGCCCAGCCTAGAGACCAGGCAGATCCAAAGAC
GCGAGATCTTGGTGGCTTTTCAGCAGAGGAAACAGACCAGGACTCCTGGGGCCGTGGTGT
AGCCTGCCAGGCCGGCCAGGGCAAGGCCACCCCTGCGGGGGTGTGTTTGGCTTTGCGGAA
TCCTACCTTCTCAGCATCCTGGGACTGGGCCCGACTCACTAAGGGAATCTGCTGTCCTGG
GCCCGGTGGTCCTCTCAGCCTACAGCCTGTCCAGAAAGCTGGGCCTCGTGGCCTGCAGGA
GACTGGGTCAAGGGGCTCACATAGGTCCCTTGGATCTTTGTTTTGTGACCCCGCCAGCCC
TGGTTGGCCTTTGACCGATCGATGCTTCCCAAACTGGCCCTGCAGCCCCTGGCCCCACCT
GCCACAAGGGAGGCCCTGCTGGGCGTGGAGGCCTGGCTGCCTTTCTAGCCGGTCACACTG
GGGAATCCCCCCTGCTGGCCTCCACCCAGAATGCCCGGCACGCCTCCTGGCACTCATCCA
CTTTCCTGGGCCCTCTTCCAGCAGACCGCAGGCTTTGGCAGCGGGAGGATGGGTGCCTGG
GGGGCCCAGCCCCTTCCCACGGCTCTTCTGGCCCCCAGCAGGGGGATGGGGTGGCAGAGA
CCAATTCCGTTTAACATGGAAATAAAAGATCCCTTTACTGGCAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               515-803, - strand, RNAz p=0.998311

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               515-803, - strand, RNAz p=0.998311

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               720-816, + strand, RNAmicro p=0.999937
               

               
               775-920, - strand, RNAmicro p=0.986335
               

               
               568-763, - strand, RNAmicro p=0.962062

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               720-816, + strand, RNAmicro p=0.999937
               

               
               775-920, - strand, RNAmicro p=0.986335
               

               
               568-763, - strand, RNAmicro p=0.962062

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               120-942, gnl|bosTau2|chr11 (81703858-81704731)
               

               
               120-942, gnl|Hg17|chr9 (130997163-130998000)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-942, gnl|bosTau2|chr11 (81703858-81704731)
               

               
               120-942, gnl|Hg17|chr9 (130997163-130998000)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

	720-816, + strand, RNAmicro p=0.999937
	775-920, - strand, RNAmicro p=0.986335
	568-763, - strand, RNAmicro p=0.962062

	120-942, gnl\|bosTau2\|chr11 (81703858-81704731)
	120-942, gnl\|Hg17\|chr9 (130997163-130998000)