Ss1.1-Pig2-47K07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGCAGTACCTGGACAAGCTGAAGCAGCTGTCCAAGTATATTGAGCCGCTGCGCCGCA TGATCAACAAGATCGACAAGAACGAAGACAGGAAAAAGGATCTGAGTAAGATGAAGAGCC TTCTGGACATCCTGACAGACCCCTCCAAGCGGTGCCCCCTGAAAACGCTGCAGAAGTGTG AGATCGCCCTGGAGAAACTCAAGAACGACATGGCGGTGCCCACACCCCCTCCGCCCCCGG TGCCACCAACCAAGCAGCAGTATCTGTGCCAGCCGCTCCTGGACGCTGTCCTGGCCAACA TCCGCTCGCCTGTCTTCAACCATTCCCTGTACCGCACGTTTGTGCCGGCCATGACGGCCA TCCACGGGCCACCCATCACGGCCCCGGTGGTGTGTGCCCGGAAGCGCAGGTTTGAGGAGG ATGAACGGCAGAGCATCCCCAATGTGCTCCAGGGCGAAGTGGCACGGCTAGATCCTAAGT TCCTGGTGAACTTGGACCCTTCTCACTGCAGTAACAATGGCACTGTCCACCTGATATGCA AGCTGGATGACAAGGACCTCCCCAGCGTGCCACCACTGGAGCTCAGCGTGCCCGCCGACT ACCCCGCCCAGAGCCCACTATGGATCGACCGGCAGTGGCAGTACGATGCCAACCCTTTCC TGCAGTCAGTGCACAGATGCATGACCTCCCGGCTGCTGCAGCTCCCGGACAAGCACTCGG TCACAGCCCTGCTCAACACCTGGGCCCAGAGCATCCACCAGGCCTGCCTCTCAGCCGCCT AACCACCCTGGCTGTTCTGCCCACCCTCTAGGGACCACGGGGTGGCCAGGAGCCTTCTTG GGCTCTGTGTCGGACATTTCTAGATACTGGCTTCCTTAGAGAGCCTGGGCTTAGGTTAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGCAGTACCTGGACAAGCTGAAGCAGCTGTCCAAGTATATTGAGCCGCTGCGCCGCA TGATCAACAAGATCGACAAGAACGAAGACAGGAAAAAGGATCTGAGTAAGATGAAGAGCC TTCTGGACATCCTGACAGACCCCTCCAAGCGGTGCCCCCTGAAAACGCTGCAGAAGTGTG AGATCGCCCTGGAGAAACTCAAGAACGACATGGCGGTGCCCACACCCCCTCCGCCCCCGG TGCCACCAACCAAGCAGCAGTATCTGTGCCAGCCGCTCCTGGACGCTGTCCTGGCCAACA TCCGCTCGCCTGTCTTCAACCATTCCCTGTACCGCACGTTTGTGCCGGCCATGACGGCCA TCCACGGGCCACCCATCACGGCCCCGGTGGTGTGTGCCCGGAAGCGCAGGTTTGAGGAGG ATGAACGGCAGAGCATCCCCAATGTGCTCCAGGGCGAAGTGGCACGGCTAGATCCTAAGT TCCTGGTGAACTTGGACCCTTCTCACTGCAGTAACAATGGCACTGTCCACCTGATATGCA AGCTGGATGACAAGGACCTCCCCAGCGTGCCACCACTGGAGCTCAGCGTGCCCGCCGACT ACCCCGCCCAGAGCCCACTATGGATCGACCGGCAGTGGCAGTACGATGCCAACCCTTTCC TGCAGTCAGTGCACAGATGCATGACCTCCCGGCTGCTGCAGCTCCCGGACAAGCACTCGG TCACAGCCCTGCTCAACACCTGGGCCCAGAGCATCCACCAGGCCTGCCTCTCAGCCGCCT AACCACCCTGGCTGTTCTGCCCACCCTCTAGGGACCACGGGGTGGCCAGGAGCCTTCTTG GGCTCTGTGTCGGACATTTCTAGATACTGGCTTCCTTAGAGAGCCTGGGCTTAGGTTAGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 218-380, gnl|bosTau2|chr17 (45665446-45665284) | |
| 218-380, gnl|canFam2|chr26 (33431207-33431389) | |
| 218-380, gnl|canFam2|chr26 (33431389-33431207) | |
| 218-380, gnl|canFam2|chr26 (33431193-33431389) | |
| 218-380, gnl|danRer3|chr21 (9482070-9481893) | |
| 218-380, gnl|danRer3|chr21 (9481893-9482074) | |
| 218-380, gnl|danRer3|chr21 (9482069-9481893) | |
| 218-380, gnl|dasNov1|scaffold_203442 (2518-2699) | |
| 218-380, gnl|dasNov1|scaffold_203442 (2699-2518) | |
| 218-380, gnl|dasNov1|scaffold_203442 (2503-2699) | |
| 218-380, gnl|fr1|chrUn (238852802-238852967) | |
| 218-380, gnl|fr1|chrUn (238852967-238852802) | |
| 218-380, gnl|fr1|chrUn (238852786-238852967) | |
| 218-380, gnl|galGal2|chr15 (8257959-8258139) | |
| 218-380, gnl|galGal2|chr15 (8258139-8257977) | |
| 218-380, gnl|galGal2|chr15 (8257960-8258139) | |
| 218-380, gnl|hg17|chr14 (18570169-18570341) | |
| 218-380, gnl|hg17|chr2 (130609758-130609952) | |
| 218-380, gnl|hg17|chr22 (14715556-14715728) | |
| 218-380, gnl|Hg17|chr22 (19263695-19263857) | |
| 218-380, gnl|mm7|chr16 (17203350-17203168) | |
| 218-380, gnl|mm7|chr16 (17203168-17203350) | |
| 218-380, gnl|mm7|chr16 (17203365-17203168) | |
| 218-380, gnl|Mm7|chr16 (17203339-17203177) | |
| 218-380, gnl|monDom2|scaffold_112 (3445897-3446075) | |
| 218-380, gnl|monDom2|scaffold_112 (3446075-3445897) | |
| 218-380, gnl|monDom2|scaffold_112 (3445881-3446075) | |
| 218-380, gnl|panTro1|chr13 (17688487-17688308) | |
| 218-380, gnl|panTro1|chr13 (17688308-17688487) | |
| 218-380, gnl|panTro1|chr13 (16766497-16766694) | |
| 218-380, gnl|rheMac2|chr13 (136620829-136620996) | |
| 218-380, gnl|rheMac2|chr13 (136620996-136620829) | |
| 218-380, gnl|rheMac2|chr13 (136620814-136620996) | |
| 218-380, gnl|rn3|chr11 (85383265-85383446) | |
| 218-380, gnl|rn3|chr11 (85383446-85383265) | |
| 218-380, gnl|rn3|chr11 (85383250-85383446) | |
| 218-380, gnl|tetNig1|chrUn_random (46090992-46091154) | |
| 218-380, gnl|tetNig1|chrUn_random (46091155-46090992) | |
| 218-380, gnl|tetNig1|chrUn_random (46090978-46091154) | |
| 218-380, gnl|xenTro1|scaffold_169 (780820-780651) | |
| 218-380, gnl|xenTro1|scaffold_169 (780651-780820) | |
| 218-380, gnl|xenTro1|scaffold_169 (780817-780651) | |
| 645-900, gnl|bosTau2|chr17 (45664221-45663960) | |
| 645-900, gnl|Hg17|chr22 (19265408-19265652) | |
| 645-900, gnl|Mm7|chr16 (17201997-17201753) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 218-380, gnl|bosTau2|chr17 (45665446-45665284) | |
| 218-380, gnl|canFam2|chr26 (33431207-33431389) | |
| 218-380, gnl|canFam2|chr26 (33431389-33431207) | |
| 218-380, gnl|canFam2|chr26 (33431193-33431389) | |
| 218-380, gnl|danRer3|chr21 (9482070-9481893) | |
| 218-380, gnl|danRer3|chr21 (9481893-9482074) | |
| 218-380, gnl|danRer3|chr21 (9482069-9481893) | |
| 218-380, gnl|dasNov1|scaffold_203442 (2518-2699) | |
| 218-380, gnl|dasNov1|scaffold_203442 (2699-2518) | |
| 218-380, gnl|dasNov1|scaffold_203442 (2503-2699) | |
| 218-380, gnl|fr1|chrUn (238852802-238852967) | |
| 218-380, gnl|fr1|chrUn (238852967-238852802) | |
| 218-380, gnl|fr1|chrUn (238852786-238852967) | |
| 218-380, gnl|galGal2|chr15 (8257959-8258139) | |
| 218-380, gnl|galGal2|chr15 (8258139-8257977) | |
| 218-380, gnl|galGal2|chr15 (8257960-8258139) | |
| 218-380, gnl|hg17|chr14 (18570169-18570341) | |
| 218-380, gnl|hg17|chr2 (130609758-130609952) | |
| 218-380, gnl|hg17|chr22 (14715556-14715728) | |
| 218-380, gnl|Hg17|chr22 (19263695-19263857) | |
| 218-380, gnl|mm7|chr16 (17203350-17203168) | |
| 218-380, gnl|mm7|chr16 (17203168-17203350) | |
| 218-380, gnl|mm7|chr16 (17203365-17203168) | |
| 218-380, gnl|Mm7|chr16 (17203339-17203177) | |
| 218-380, gnl|monDom2|scaffold_112 (3445897-3446075) | |
| 218-380, gnl|monDom2|scaffold_112 (3446075-3445897) | |
| 218-380, gnl|monDom2|scaffold_112 (3445881-3446075) | |
| 218-380, gnl|panTro1|chr13 (17688487-17688308) | |
| 218-380, gnl|panTro1|chr13 (17688308-17688487) | |
| 218-380, gnl|panTro1|chr13 (16766497-16766694) | |
| 218-380, gnl|rheMac2|chr13 (136620829-136620996) | |
| 218-380, gnl|rheMac2|chr13 (136620996-136620829) | |
| 218-380, gnl|rheMac2|chr13 (136620814-136620996) | |
| 218-380, gnl|rn3|chr11 (85383265-85383446) | |
| 218-380, gnl|rn3|chr11 (85383446-85383265) | |
| 218-380, gnl|rn3|chr11 (85383250-85383446) | |
| 218-380, gnl|tetNig1|chrUn_random (46090992-46091154) | |
| 218-380, gnl|tetNig1|chrUn_random (46091155-46090992) | |
| 218-380, gnl|tetNig1|chrUn_random (46090978-46091154) | |
| 218-380, gnl|xenTro1|scaffold_169 (780820-780651) | |
| 218-380, gnl|xenTro1|scaffold_169 (780651-780820) | |
| 218-380, gnl|xenTro1|scaffold_169 (780817-780651) | |
| 645-900, gnl|bosTau2|chr17 (45664221-45663960) | |
| 645-900, gnl|Hg17|chr22 (19265408-19265652) | |
| 645-900, gnl|Mm7|chr16 (17201997-17201753) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| ebs (0.118301) | |
| cty (0.10408) |