Non-Coding RNA Search

Ss1.1-Pig2-47K11.5

Sequence:


               
               CATTAATAAGGTTCTTCCTAATAATAATTAAGAGATTGACGCTCCAAACACGTATTCATG
ACGAACAGATACACATCAAAATCATAATAATATTTTCAAAACAAGGAATAATTTCTCTAA
TGGTTTATTATAGAATACCAATGTATAGCTTAGAAATAAAACTTTGAATATTTCAAGAAT
ATAGATAAGTCTAATTTTTAAACGCTGTATATATGGCTTTCACTCAGTCATCTCTCAGAT
GTTGTTATTAACTCGCTCTGTGTTGTTGCAAAACTTTTTGGTGCGGACACGTTTCCAAAA
CTATTGCTACTTTGTGTGCTTTAAACGAAATACCTTGGGTTGAGGTTTTATCAACCTAGT
GCTAGGAATACTGTGTATCTATCATTAGCTGTATGGGACTGTAGCGTAGATTGTGGTTTC
TCAGTAGAGAAGTGACTGTAGTGTGATTCTAGATAGATCATCATTAGCAATTCATTCAGA
TGGTCAATAACTTGAAATTTATAGCTGTGATAGGAGTTCAGAAATTGGCACATCCCTTTA
AAAATGACAACAGAAAATACAACTCCTGGGAAAAAAAAAAAAAAGGTGCTGATTCTCTAA
GATTATTTATATACGTAAGTGTTTAAAAAGATTATTTTCCAGAAAGTTTGTGCAGGGTTT
AAGTTGCTACTATTCAACCACACACTATATATAAATAAAATATATACACTATATACATTG
ATTTCACTGAATCACATTGAAGTACTTGGGCTTCAGAAGTAAGAGCCAATCAACTGAAAA
CATGAGATGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTAATAAGGTTCTTCCTAATAATAATTAAGAGATTGACGCTCCAAACACGTATTCATG
ACGAACAGATACACATCAAAATCATAATAATATTTTCAAAACAAGGAATAATTTCTCTAA
TGGTTTATTATAGAATACCAATGTATAGCTTAGAAATAAAACTTTGAATATTTCAAGAAT
ATAGATAAGTCTAATTTTTAAACGCTGTATATATGGCTTTCACTCAGTCATCTCTCAGAT
GTTGTTATTAACTCGCTCTGTGTTGTTGCAAAACTTTTTGGTGCGGACACGTTTCCAAAA
CTATTGCTACTTTGTGTGCTTTAAACGAAATACCTTGGGTTGAGGTTTTATCAACCTAGT
GCTAGGAATACTGTGTATCTATCATTAGCTGTATGGGACTGTAGCGTAGATTGTGGTTTC
TCAGTAGAGAAGTGACTGTAGTGTGATTCTAGATAGATCATCATTAGCAATTCATTCAGA
TGGTCAATAACTTGAAATTTATAGCTGTGATAGGAGTTCAGAAATTGGCACATCCCTTTA
AAAATGACAACAGAAAATACAACTCCTGGGAAAAAAAAAAAAAAGGTGCTGATTCTCTAA
GATTATTTATATACGTAAGTGTTTAAAAAGATTATTTTCCAGAAAGTTTGTGCAGGGTTT
AAGTTGCTACTATTCAACCACACACTATATATAAATAAAATATATACACTATATACATTG
ATTTCACTGAATCACATTGAAGTACTTGGGCTTCAGAAGTAAGAGCCAATCAACTGAAAA
CATGAGATGGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-358, + strand, RNAz p=0.552266

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-358, + strand, RNAz p=0.552266

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC064700, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC064700, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr16 (8360022-8360807)
               

               
               1-792, gnl|Hg17|chr1 (213066631-213065850)
               

               
               1-792, gnl|Mm7|chr1 (187739502-187740269)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr16 (8360022-8360807)
               

               
               1-792, gnl|Hg17|chr1 (213066631-213065850)
               

               
               1-792, gnl|Mm7|chr1 (187739502-187740269)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pro (0.512033)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	1-792, gnl\|bosTau2\|chr16 (8360022-8360807)
	1-792, gnl\|Hg17\|chr1 (213066631-213065850)
	1-792, gnl\|Mm7\|chr1 (187739502-187740269)