Non-Coding RNA Search

Ss1.1-Pig2-47K13.5

Sequence:


               
               TATTTCCCCTCCCTGGCCTGGCGGCCCCTCCCCCTCCTTAAAAGGGGCAGGTTCAGGGGC
CCGGTGCTCTCCCTCCCTCCCGTTGCACCCCCATGCCCATTTGCACAGCTGCCCAGGCAC
CCCCATTAGTTGGGGGGGGTCGCAGGGAGGGGGTAGCGGGACCAGTCCTTGTATCTATTT
AAAAAGTGATGATGTAATATATTGGGGTAGGGGGAGGTCAGGTTGCCCTGGGCCTCATCT
TAGCATTTCAGGTGATGGGGGAGCCTGGGGCTGAGGAGACCTGGGGCCTAGCCCCAGGGA
GTGAGGACAATGTGGCCTCCCCCCTCCCCCCTTGCGGCTTCTCCACTCATGCCTTAGGGG
GGGAGGCAGTCCCCCCTCTCCTGTTCCCTTCCCCTTGCCCTGCCCCCCACCTCGGGTGTA
AGCGACAGGAAGAAATAATAATAATTTAAGATTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTCCCCTCCCTGGCCTGGCGGCCCCTCCCCCTCCTTAAAAGGGGCAGGTTCAGGGGC
CCGGTGCTCTCCCTCCCTCCCGTTGCACCCCCATGCCCATTTGCACAGCTGCCCAGGCAC
CCCCATTAGTTGGGGGGGGTCGCAGGGAGGGGGTAGCGGGACCAGTCCTTGTATCTATTT
AAAAAGTGATGATGTAATATATTGGGGTAGGGGGAGGTCAGGTTGCCCTGGGCCTCATCT
TAGCATTTCAGGTGATGGGGGAGCCTGGGGCTGAGGAGACCTGGGGCCTAGCCCCAGGGA
GTGAGGACAATGTGGCCTCCCCCCTCCCCCCTTGCGGCTTCTCCACTCATGCCTTAGGGG
GGGAGGCAGTCCCCCCTCTCCTGTTCCCTTCCCCTTGCCCTGCCCCCCACCTCGGGTGTA
AGCGACAGGAAGAAATAATAATAATTTAAGATTCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-278, + strand, RNAz p=0.99238

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-278, + strand, RNAz p=0.99238

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-278, gnl|bosTau2|chr3 (9097378-9097646)
               

               
               1-278, gnl|Hg17|chr1 (151803614-151803893)
               

               
               1-278, gnl|Mm7|chr3 (89504753-89504485)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr3 (9097378-9097646)
               

               
               1-278, gnl|Hg17|chr1 (151803614-151803893)
               

               
               1-278, gnl|Mm7|chr3 (89504753-89504485)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.197844)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)

	1-278, gnl\|bosTau2\|chr3 (9097378-9097646)
	1-278, gnl\|Hg17\|chr1 (151803614-151803893)
	1-278, gnl\|Mm7\|chr3 (89504753-89504485)