Non-Coding RNA Search

Ss1.1-Pig2-47N07.5

Sequence:


               
               GGGTGCCCCCCAGAAGGAAGCATGTTCATATTCCATTCTCTCCAAGGACAGCTCAAGGTG
TCTGTACTTTGTCCAGGTTGGGATGGGGGATCTGATTGCTGTTTCCTTTCCAGGGAGCAG
CTAAATGGTCTCATTACACGGAGACCTCTGCTCCTCGCTTTTCTAAATCATGGTAGGACA
GTAACACGTCCAGAAGGAATGTTTACTGCCTTCGCCCTTGGGTGCGGTCCCTATGCCTGG
TACAAGTGTACATCCAGCTTGCCCAGGATCGATATTGACAAGAGGATTCTGGTGTCTCAA
TTAATTTAGTATCTTTACTTCAAAAAAAAAAATGCCAACAGAACAACAACAAAAACCCAA
CAAAACCAACACAAGAATTAAAACATGATTGTTTTATTTTTGTATGTTTATGCATCACTT
TGTGTCCTATGTGAATAGCTATGTATAATATGTTATTTAAGTATATTTATAGAAGTTCAG
ATTACTAGTGTTTTAAAGGATGACATACTATTCCTATGTTTTGTTCAGTGTATATTTCAA
AGTATATACTTTTTGCTTGAGAAAAGTAGGAATACTCTCGATTCAGTGGACTTACTATGT
TGCACTATAATGTCTGAGGAATGCTCAGGAAATCTCGCGGGGTAAATGGGGGCATGCATT
AATAATCTTTACTTTCTGGCTTTTCTCTCTCTCTCCCCCCAGAATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGCCCCCCAGAAGGAAGCATGTTCATATTCCATTCTCTCCAAGGACAGCTCAAGGTG
TCTGTACTTTGTCCAGGTTGGGATGGGGGATCTGATTGCTGTTTCCTTTCCAGGGAGCAG
CTAAATGGTCTCATTACACGGAGACCTCTGCTCCTCGCTTTTCTAAATCATGGTAGGACA
GTAACACGTCCAGAAGGAATGTTTACTGCCTTCGCCCTTGGGTGCGGTCCCTATGCCTGG
TACAAGTGTACATCCAGCTTGCCCAGGATCGATATTGACAAGAGGATTCTGGTGTCTCAA
TTAATTTAGTATCTTTACTTCAAAAAAAAAAATGCCAACAGAACAACAACAAAAACCCAA
CAAAACCAACACAAGAATTAAAACATGATTGTTTTATTTTTGTATGTTTATGCATCACTT
TGTGTCCTATGTGAATAGCTATGTATAATATGTTATTTAAGTATATTTATAGAAGTTCAG
ATTACTAGTGTTTTAAAGGATGACATACTATTCCTATGTTTTGTTCAGTGTATATTTCAA
AGTATATACTTTTTGCTTGAGAAAAGTAGGAATACTCTCGATTCAGTGGACTTACTATGT
TGCACTATAATGTCTGAGGAATGCTCAGGAAATCTCGCGGGGTAAATGGGGGCATGCATT
AATAATCTTTACTTTCTGGCTTTTCTCTCTCTCTCCCCCCAGAATGCT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-257, gnl|bosTau2|chr9 (54976036-54976303)
               

               
               1-257, gnl|canFam2|chr1 (47115761-47116162)
               

               
               1-257, gnl|dasNov1|scaffold_153 (184076-184412)
               

               
               1-257, gnl|hg17|chr6 (154572234-154572602)
               

               
               1-257, gnl|Hg17|chr6 (154572500-154572235)
               

               
               1-257, gnl|mm7|chr10 (3456923-3456549)
               

               
               1-257, gnl|monDom2|scaffold_0 (50741098-50740745)
               

               
               1-257, gnl|oryCun1|scaffold_175497 (89237-89597)
               

               
               1-257, gnl|panTro1|chr5 (158129482-158129852)
               

               
               1-257, gnl|rheMac2|chr4 (108809278-108808910)
               

               
               1-257, gnl|rn3|chr1 (37638010-37638383)
               


               
               357-690, gnl|bosTau2|chr9 (54976487-54976829)
               

               
               357-690, gnl|Hg17|chr6 (154572172-154571834)
               

               
               357-690, gnl|Mm7|chr10 (3456970-3457339)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-257, gnl|bosTau2|chr9 (54976036-54976303)
               

               
               1-257, gnl|canFam2|chr1 (47115761-47116162)
               

               
               1-257, gnl|dasNov1|scaffold_153 (184076-184412)
               

               
               1-257, gnl|hg17|chr6 (154572234-154572602)
               

               
               1-257, gnl|Hg17|chr6 (154572500-154572235)
               

               
               1-257, gnl|mm7|chr10 (3456923-3456549)
               

               
               1-257, gnl|monDom2|scaffold_0 (50741098-50740745)
               

               
               1-257, gnl|oryCun1|scaffold_175497 (89237-89597)
               

               
               1-257, gnl|panTro1|chr5 (158129482-158129852)
               

               
               1-257, gnl|rheMac2|chr4 (108809278-108808910)
               

               
               1-257, gnl|rn3|chr1 (37638010-37638383)
               


               
               357-690, gnl|bosTau2|chr9 (54976487-54976829)
               

               
               357-690, gnl|Hg17|chr6 (154572172-154571834)
               

               
               357-690, gnl|Mm7|chr10 (3456970-3457339)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               thg (0.126791)

	1-257, gnl\|bosTau2\|chr9 (54976036-54976303)
	1-257, gnl\|canFam2\|chr1 (47115761-47116162)
	1-257, gnl\|dasNov1\|scaffold_153 (184076-184412)
	1-257, gnl\|hg17\|chr6 (154572234-154572602)
	1-257, gnl\|Hg17\|chr6 (154572500-154572235)
	1-257, gnl\|mm7\|chr10 (3456923-3456549)
	1-257, gnl\|monDom2\|scaffold_0 (50741098-50740745)
	1-257, gnl\|oryCun1\|scaffold_175497 (89237-89597)
	1-257, gnl\|panTro1\|chr5 (158129482-158129852)
	1-257, gnl\|rheMac2\|chr4 (108809278-108808910)
	1-257, gnl\|rn3\|chr1 (37638010-37638383)

	357-690, gnl\|bosTau2\|chr9 (54976487-54976829)
	357-690, gnl\|Hg17\|chr6 (154572172-154571834)
	357-690, gnl\|Mm7\|chr10 (3456970-3457339)