Ss1.1-Pig2-48C24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAAAGTCGGCTACACGTATGCACTCAGTTCAAGTTATTCTTCTGATGCTCTGGATTT CGAGACTGAGCACAAATTGGATCCTGTGTTTGATTCTCCAAGAATGTCCCGCCGCCGCCC CCGCTGGAGCAGCCACAGAGGCCCCAAAGCCTGAAGAGAAGAAAAAGTCGGAGCAGCCCA AGGATGAAGTGGGAACGAGAAAGGGGTGTCGCCGCTACAGGTGGGAACTCAAGGACAGCA ATCGAGAGTTCTGGGTTATGGGGCACGCCGAGGTCAAGATCCTGAGCTTGGACCTTCTCA ATGACTTGTTCGCCTGTGGTTTCCTCGTGGGGGCTGTGGTCTTTGCTGTGACCAGTCGAA AAACCATGCCAGTGCACTATGCTATTGCTGTGGTCCTCATGGGTGTTGCCGCAATTTTTG CTTTAATTGATATCTGTATTCAAAGAAAACACTTCAAAGGCAAGAAGGTCAAAAGGAATG TGCTGGTTCCTCCAGAAAAGGGAAAAGAGGGTGAAAAGCCAAAGGAAGACGAAAAAGCAC CTGCAGCAGAAAAGGAGAAGGGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAAAGTCGGCTACACGTATGCACTCAGTTCAAGTTATTCTTCTGATGCTCTGGATTT CGAGACTGAGCACAAATTGGATCCTGTGTTTGATTCTCCAAGAATGTCCCGCCGCCGCCC CCGCTGGAGCAGCCACAGAGGCCCCAAAGCCTGAAGAGAAGAAAAAGTCGGAGCAGCCCA AGGATGAAGTGGGAACGAGAAAGGGGTGTCGCCGCTACAGGTGGGAACTCAAGGACAGCA ATCGAGAGTTCTGGGTTATGGGGCACGCCGAGGTCAAGATCCTGAGCTTGGACCTTCTCA ATGACTTGTTCGCCTGTGGTTTCCTCGTGGGGGCTGTGGTCTTTGCTGTGACCAGTCGAA AAACCATGCCAGTGCACTATGCTATTGCTGTGGTCCTCATGGGTGTTGCCGCAATTTTTG CTTTAATTGATATCTGTATTCAAAGAAAACACTTCAAAGGCAAGAAGGTCAAAAGGAATG TGCTGGTTCCTCCAGAAAAGGGAAAAGAGGGTGAAAAGCCAAAGGAAGACGAAAAAGCAC CTGCAGCAGAAAAGGAGAAGGGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 29-138, gnl|bosTau2|chr25 (40445057-40445165) | |
| 29-138, gnl|canFam2|chr6 (19036476-19036351) | |
| 29-138, gnl|danRer3|chr3 (1643616-1643476) | |
| 29-138, gnl|echTel1|scaffold_240288 (7067-6945) | |
| 29-138, gnl|galGal2|chr14 (4362336-4362458) | |
| 29-138, gnl|hg17|chr7 (651666-651788) | |
| 29-138, gnl|Hg17|chr7 (651674-651782) | |
| 29-138, gnl|mm7|chr5 (138195694-138195819) | |
| 29-138, gnl|Mm7|chr5 (138195702-138195810) | |
| 29-138, gnl|monDom2|scaffold_19 (49852648-49852770) | |
| 29-138, gnl|oryCun1|scaffold_120575 (1740-1861) | |
| 29-138, gnl|panTro1|chr6 (689247-689369) | |
| 29-138, gnl|rheMac2|chr3 (38768587-38768709) | |
| 29-138, gnl|rn3|chr12 (15953052-15952924) | |
| 29-138, gnl|tetNig1|chr3 (9578467-9578342) | |
| 159-291, gnl|bosTau2|chr18 (29893093-29893225) | |
| 159-291, gnl|canFam2|chr5 (85704014-85703370) | |
| 159-291, gnl|dasNov1|scaffold_8336 (10116-10737) | |
| 159-291, gnl|echTel1|scaffold_275979 (9067-8491) | |
| 159-291, gnl|hg17|chr16 (65171118-65171780) | |
| 159-291, gnl|Hg17|chr16 (65171162-65171297) | |
| 159-291, gnl|loxAfr1|scaffold_6001 (66221-66816) | |
| 159-291, gnl|mm7|chr8 (102922905-102923413) | |
| 159-291, gnl|Mm7|chr8 (102922884-102923003) | |
| 159-291, gnl|oryCun1|scaffold_111099 (3233-3828) | |
| 159-291, gnl|panTro1|chr18 (59411485-59412101) | |
| 159-291, gnl|rheMac2|chr20 (64840902-64841524) | |
| 159-291, gnl|rn3|chr19 (609364-608880) | |
| 392-563, gnl|bosTau2|chr18 (29943116-29943285) | |
| 392-563, gnl|canFam2|chr5 (85687438-85686959) | |
| 392-563, gnl|dasNov1|scaffold_57996 (7479-7907) | |
| 392-563, gnl|hg17|chr16 (65179310-65179771) | |
| 392-563, gnl|Hg17|chr16 (65179322-65179467) | |
| 392-563, gnl|loxAfr1|scaffold_6001 (70892-71322) | |
| 392-563, gnl|mm7|chr8 (102930906-102931387) | |
| 392-563, gnl|Mm7|chr8 (102930918-102931084) | |
| 392-563, gnl|oryCun1|scaffold_111099 (10987-11553) | |
| 392-563, gnl|panTro1|chr18 (59419623-59420084) | |
| 392-563, gnl|rheMac2|chr20 (64854792-64855235) | |
| 392-563, gnl|rn3|chr19 (598863-598384) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-138, gnl|bosTau2|chr25 (40445057-40445165) | |
| 29-138, gnl|canFam2|chr6 (19036476-19036351) | |
| 29-138, gnl|danRer3|chr3 (1643616-1643476) | |
| 29-138, gnl|echTel1|scaffold_240288 (7067-6945) | |
| 29-138, gnl|galGal2|chr14 (4362336-4362458) | |
| 29-138, gnl|hg17|chr7 (651666-651788) | |
| 29-138, gnl|Hg17|chr7 (651674-651782) | |
| 29-138, gnl|mm7|chr5 (138195694-138195819) | |
| 29-138, gnl|Mm7|chr5 (138195702-138195810) | |
| 29-138, gnl|monDom2|scaffold_19 (49852648-49852770) | |
| 29-138, gnl|oryCun1|scaffold_120575 (1740-1861) | |
| 29-138, gnl|panTro1|chr6 (689247-689369) | |
| 29-138, gnl|rheMac2|chr3 (38768587-38768709) | |
| 29-138, gnl|rn3|chr12 (15953052-15952924) | |
| 29-138, gnl|tetNig1|chr3 (9578467-9578342) | |
| 159-291, gnl|bosTau2|chr18 (29893093-29893225) | |
| 159-291, gnl|canFam2|chr5 (85704014-85703370) | |
| 159-291, gnl|dasNov1|scaffold_8336 (10116-10737) | |
| 159-291, gnl|echTel1|scaffold_275979 (9067-8491) | |
| 159-291, gnl|hg17|chr16 (65171118-65171780) | |
| 159-291, gnl|Hg17|chr16 (65171162-65171297) | |
| 159-291, gnl|loxAfr1|scaffold_6001 (66221-66816) | |
| 159-291, gnl|mm7|chr8 (102922905-102923413) | |
| 159-291, gnl|Mm7|chr8 (102922884-102923003) | |
| 159-291, gnl|oryCun1|scaffold_111099 (3233-3828) | |
| 159-291, gnl|panTro1|chr18 (59411485-59412101) | |
| 159-291, gnl|rheMac2|chr20 (64840902-64841524) | |
| 159-291, gnl|rn3|chr19 (609364-608880) | |
| 392-563, gnl|bosTau2|chr18 (29943116-29943285) | |
| 392-563, gnl|canFam2|chr5 (85687438-85686959) | |
| 392-563, gnl|dasNov1|scaffold_57996 (7479-7907) | |
| 392-563, gnl|hg17|chr16 (65179310-65179771) | |
| 392-563, gnl|Hg17|chr16 (65179322-65179467) | |
| 392-563, gnl|loxAfr1|scaffold_6001 (70892-71322) | |
| 392-563, gnl|mm7|chr8 (102930906-102931387) | |
| 392-563, gnl|Mm7|chr8 (102930918-102931084) | |
| 392-563, gnl|oryCun1|scaffold_111099 (10987-11553) | |
| 392-563, gnl|panTro1|chr18 (59419623-59420084) | |
| 392-563, gnl|rheMac2|chr20 (64854792-64855235) | |
| 392-563, gnl|rn3|chr19 (598863-598384) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| fcc (0.197785) |