Non-Coding RNA Search

Ss1.1-Pig2-48D01.5

Sequence:


               
               TTTCAAGGAATAAAGGTGGAGCTCCTAGATTAGATTCCACCTTAAGAGAGAGGCTTATAT
TTGAGAATATTTCACTTGTAGATAAATTGGACGTCCCCCCTCCCTTATGCTGGCCTTTAC
CAGTTCTATCATTTGACTGAAAATGAATGACTTCCTACAGTGTAAAAAGTCCATTTCCTG
TTTATTCAAGACTTCTGGGCCATTTCCAACTGTATAGAGGAAGGGAGTCCCTAAGATCTC
TTTCTTCTCAGACTTAAAATTCCACATCGAGTGTTCCATTAAAAGAAGATACGGCATTCT
GAGTGCAAACTCGGGGCTTCTCAAACTCTACACCAGCAGTCAGTGAGGAGAACGTTGAAC
AATTATTGACTTGCTTTCTTGGGTCTCTATAATCAATAACCTGTCCGCAGATATCTATCT
ATATAAAGATATTATATATAAATATAAATTTACATATATATGCACATGTATATATAGCTG
TACATATATGTGTGTATATATATACTTAAATGTAATATTTACAAAATAAAACTGTGATCT
CGTCTAGAGAAAATGTATTCATATTACAAAACTGCTCTTCCATATTTATGTATCATATTA
TACCTTTTTATTATTGTTATAATTATTATGGGTATTTCTAATTATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAAGGAATAAAGGTGGAGCTCCTAGATTAGATTCCACCTTAAGAGAGAGGCTTATAT
TTGAGAATATTTCACTTGTAGATAAATTGGACGTCCCCCCTCCCTTATGCTGGCCTTTAC
CAGTTCTATCATTTGACTGAAAATGAATGACTTCCTACAGTGTAAAAAGTCCATTTCCTG
TTTATTCAAGACTTCTGGGCCATTTCCAACTGTATAGAGGAAGGGAGTCCCTAAGATCTC
TTTCTTCTCAGACTTAAAATTCCACATCGAGTGTTCCATTAAAAGAAGATACGGCATTCT
GAGTGCAAACTCGGGGCTTCTCAAACTCTACACCAGCAGTCAGTGAGGAGAACGTTGAAC
AATTATTGACTTGCTTTCTTGGGTCTCTATAATCAATAACCTGTCCGCAGATATCTATCT
ATATAAAGATATTATATATAAATATAAATTTACATATATATGCACATGTATATATAGCTG
TACATATATGTGTGTATATATATACTTAAATGTAATATTTACAAAATAAAACTGTGATCT
CGTCTAGAGAAAATGTATTCATATTACAAAACTGCTCTTCCATATTTATGTATCATATTA
TACCTTTTTATTATTGTTATAATTATTATGGGTATTTCTAATTATTAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               278-648, gnl|bosTau2|chr8 (56693574-56693944)
               

               
               278-648, gnl|Hg17|chr9 (116243207-116243578)
               

               
               278-648, gnl|Mm7|chr4 (64790200-64790562)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               278-648, gnl|bosTau2|chr8 (56693574-56693944)
               

               
               278-648, gnl|Hg17|chr9 (116243207-116243578)
               

               
               278-648, gnl|Mm7|chr4 (64790200-64790562)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               spc (0.113366)

	278-648, gnl\|bosTau2\|chr8 (56693574-56693944)
	278-648, gnl\|Hg17\|chr9 (116243207-116243578)
	278-648, gnl\|Mm7\|chr4 (64790200-64790562)