Non-Coding RNA Search

Ss1.1-Pig2-48E06.5

Sequence:


               
               ATCCTGATGCGCACACTGGGATCCCAGCCTGTCCTCAAGACCGACAATTTCCTCCGCTGG
CTGCAATCGGACGCCTCCTTTGTGGCAGCCATTCCTTCGACCCAGGTCGTCTACTTCTTC
TTCGAGGAGACAGCCAGCGAGTTCGAGTTCTTCGAGAAGCTCCACGCATCCCGGGTGGCC
AGAGTCTGCAAGAACGACGTGGGGGGAGAAAAGCTACTGCAGAAAAAGTGGACTACCTTC
CTGAAGGCCCAGCTGCTCTGCGCCCAGCCCGGACAGCTGCCCTTCAACGTCATCCGCCAC
GCCGTTCTGCTGGCAGACAATTACTCCACTGATCCCCATGTCTACGCAGTCTTCACCTCT
CAGTGGCGGGTCGGTGGGACCCGGAGCTCTGCTGTCTGTGCTTTTTCTCTCAAGGACATC
AAGCGTGTCTTTGAGGGAAAGTACAAGGAATTGAACAAAGAGACTTCACGCTGGACTACC
TACGGGTTCCCTGATATTAGTCCCCGGCCAGGCAGCTGCTCAGAGGGCCCCTCCTCTGAT
AAAGCCTTGACCTTCATGAAGGACCATTTCCTGATGGATGAGCCGGTGATTGGGACACCC
CTGCTGGTGAAGTCTGGTGTGGAGTACACACAGCTTGCAGTGGAGACAGCCCAGGGCATC
GATGGGCGCAGCCATCTGGTCATGTACCTGGGCACCAGCACAGGGTCCCTCCACAAGGCC
GTGGTGAGTGGGGGTAGCAGTGCTTATCTGGTGGAGGAGATCCAGCTGTTCCCGGACCCT
GAACCTGTTCGCAACCTGCAGCTGGCCCCTACCCAGGGCGCCGTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTGATGCGCACACTGGGATCCCAGCCTGTCCTCAAGACCGACAATTTCCTCCGCTGG
CTGCAATCGGACGCCTCCTTTGTGGCAGCCATTCCTTCGACCCAGGTCGTCTACTTCTTC
TTCGAGGAGACAGCCAGCGAGTTCGAGTTCTTCGAGAAGCTCCACGCATCCCGGGTGGCC
AGAGTCTGCAAGAACGACGTGGGGGGAGAAAAGCTACTGCAGAAAAAGTGGACTACCTTC
CTGAAGGCCCAGCTGCTCTGCGCCCAGCCCGGACAGCTGCCCTTCAACGTCATCCGCCAC
GCCGTTCTGCTGGCAGACAATTACTCCACTGATCCCCATGTCTACGCAGTCTTCACCTCT
CAGTGGCGGGTCGGTGGGACCCGGAGCTCTGCTGTCTGTGCTTTTTCTCTCAAGGACATC
AAGCGTGTCTTTGAGGGAAAGTACAAGGAATTGAACAAAGAGACTTCACGCTGGACTACC
TACGGGTTCCCTGATATTAGTCCCCGGCCAGGCAGCTGCTCAGAGGGCCCCTCCTCTGAT
AAAGCCTTGACCTTCATGAAGGACCATTTCCTGATGGATGAGCCGGTGATTGGGACACCC
CTGCTGGTGAAGTCTGGTGTGGAGTACACACAGCTTGCAGTGGAGACAGCCCAGGGCATC
GATGGGCGCAGCCATCTGGTCATGTACCTGGGCACCAGCACAGGGTCCCTCCACAAGGCC
GTGGTGAGTGGGGGTAGCAGTGCTTATCTGGTGGAGGAGATCCAGCTGTTCCCGGACCCT
GAACCTGTTCGCAACCTGCAGCTGGCCCCTACCCAGGGCGCCGTGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61837367|ref|XP_587362.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837367|ref|XP_587362.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               191-309, - strand, RNAz p=0.515326
               

               
               529-648, + strand, RNAz p=0.844173

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-309, - strand, RNAz p=0.515326
               

               
               529-648, + strand, RNAz p=0.844173

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC020974, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC020974, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               191-366, gnl|bosTau2|chr3 (10467402-10467227)
               

               
               191-366, gnl|Hg17|chr1 (152944208-152944383)
               

               
               191-366, gnl|Mm7|chr3 (88563655-88563480)
               


               
               490-698, gnl|bosTau2|chr3 (10460392-10460185)
               

               
               490-698, gnl|Hg17|chr1 (152955664-152955871)
               

               
               490-698, gnl|Mm7|chr3 (88554705-88554498)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-366, gnl|bosTau2|chr3 (10467402-10467227)
               

               
               191-366, gnl|Hg17|chr1 (152944208-152944383)
               

               
               191-366, gnl|Mm7|chr3 (88563655-88563480)
               


               
               490-698, gnl|bosTau2|chr3 (10460392-10460185)
               

               
               490-698, gnl|Hg17|chr1 (152955664-152955871)
               

               
               490-698, gnl|Mm7|chr3 (88554705-88554498)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	191-309, - strand, RNAz p=0.515326
	529-648, + strand, RNAz p=0.844173

	191-366, gnl\|bosTau2\|chr3 (10467402-10467227)
	191-366, gnl\|Hg17\|chr1 (152944208-152944383)
	191-366, gnl\|Mm7\|chr3 (88563655-88563480)

	490-698, gnl\|bosTau2\|chr3 (10460392-10460185)
	490-698, gnl\|Hg17\|chr1 (152955664-152955871)
	490-698, gnl\|Mm7\|chr3 (88554705-88554498)