Ss1.1-Pig2-49A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCTGGCATCACAGTCCATACAAAATACTGTATATAATGATGGACAGTCTTCAGCCATT CCTGTAGCCAGCATGGAGTTTGCAGCCATTTGTCTCAGAAATGCCTTGTTGCTGTTACCT GAAGAACAGCAAGATCCGAAGCAGGAGAATGGCTCTAAAAATAGTAATCAGTTAGGTGGT AACGCGGAGAGCAGCGAGAGCAGTGACACTTGCAGCAGTAAAAGCCATGATGGAGATAAA TTCATTCCGGCACCACCTTCTTCTCCATTGAGAAAACAGGAATTAGAAAACCTAAAATGT TCCATCCTTGCCTGCAGTGCTTATGTGGCTCTGGCTTTGGGTGATAACCTTATGGCTTTG AATCATGCAGATAAACTTCTTCAGCAGCCCAAGCTGTCAGGATCTCTGAAGTTTTTGGGC CATTTATATGCTGCAGAAGCCCTCATCTCTCTGGACAGAATATCTGATGCTATTACTCAC TTGAACCCAGAAAATGTTACTGATGTCTCCTTAGGGATCTCTTCAAATGAGCAGGACCAA GGATCAGACAAAGGTGAAAATGAAGCAATGGAATCTCCCCCTGAAGCTATCTTATTGGCT TACCCCAGTTCTCTGCAGAATGGTAACACCCAGCTGGCCCTACAGATCATCAAAAGGAAT CAGCTGCTCCCTGAATATGACAAACTCTCTGAAATGAGAAAGAAGCCAGTGTTTCAGCCT GTCCACCCAATCCAGCCCATCCAAATGCCAGCGTTCACTGTACAGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCTGGCATCACAGTCCATACAAAATACTGTATATAATGATGGACAGTCTTCAGCCATT CCTGTAGCCAGCATGGAGTTTGCAGCCATTTGTCTCAGAAATGCCTTGTTGCTGTTACCT GAAGAACAGCAAGATCCGAAGCAGGAGAATGGCTCTAAAAATAGTAATCAGTTAGGTGGT AACGCGGAGAGCAGCGAGAGCAGTGACACTTGCAGCAGTAAAAGCCATGATGGAGATAAA TTCATTCCGGCACCACCTTCTTCTCCATTGAGAAAACAGGAATTAGAAAACCTAAAATGT TCCATCCTTGCCTGCAGTGCTTATGTGGCTCTGGCTTTGGGTGATAACCTTATGGCTTTG AATCATGCAGATAAACTTCTTCAGCAGCCCAAGCTGTCAGGATCTCTGAAGTTTTTGGGC CATTTATATGCTGCAGAAGCCCTCATCTCTCTGGACAGAATATCTGATGCTATTACTCAC TTGAACCCAGAAAATGTTACTGATGTCTCCTTAGGGATCTCTTCAAATGAGCAGGACCAA GGATCAGACAAAGGTGAAAATGAAGCAATGGAATCTCCCCCTGAAGCTATCTTATTGGCT TACCCCAGTTCTCTGCAGAATGGTAACACCCAGCTGGCCCTACAGATCATCAAAAGGAAT CAGCTGCTCCCTGAATATGACAAACTCTCTGAAATGAGAAAGAAGCCAGTGTTTCAGCCT GTCCACCCAATCCAGCCCATCCAAATGCCAGCGTTCACTGTACAGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 98-215, + strand, RNAz p=0.701509 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 98-215, + strand, RNAz p=0.701509 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 39-215, gnl|bosTau2|chr22 (4700301-4700477) | |
| 39-215, gnl|canFam2|chr23 (7026780-7026581) | |
| 39-215, gnl|danRer3|chr21 (16431886-16432090) | |
| 39-215, gnl|dasNov1|scaffold_83788 (3312-3113) | |
| 39-215, gnl|echTel1|scaffold_316121 (42749-42945) | |
| 39-215, gnl|fr1|chrUn (96454319-96454502) | |
| 39-215, gnl|galGal2|chr2 (39629673-39629872) | |
| 39-215, gnl|hg17|chr3 (32751295-32751494) | |
| 39-215, gnl|Hg17|chr3 (32751296-32751472) | |
| 39-215, gnl|loxAfr1|scaffold_6174 (27736-27934) | |
| 39-215, gnl|mm7|chr9 (114264899-114264718) | |
| 39-215, gnl|Mm7|chr9 (114264896-114264720) | |
| 39-215, gnl|monDom2|scaffold_7 (88199714-88199905) | |
| 39-215, gnl|oryCun1|scaffold_120840 (5797-5600) | |
| 39-215, gnl|panTro1|chr2 (33762237-33762436) | |
| 39-215, gnl|rheMac2|chr2 (175212893-175213092) | |
| 39-215, gnl|rn3|chr8 (119050300-119050103) | |
| 39-215, gnl|tetNig1|chrUn_random (32252986-32252802) | |
| 39-215, gnl|xenTro1|scaffold_319 (1226720-1226539) | |
| 411-547, gnl|bosTau2|chr22 (4719899-4720035) | |
| 411-547, gnl|canFam2|chr23 (7003287-7003140) | |
| 411-547, gnl|danRer3|chr21 (16439207-16439356) | |
| 411-547, gnl|dasNov1|scaffold_13383 (48950-49101) | |
| 411-547, gnl|echTel1|scaffold_312842 (40474-40323) | |
| 411-547, gnl|fr1|chrUn (96454953-96455102) | |
| 411-547, gnl|galGal2|chr2 (39638467-39638627) | |
| 411-547, gnl|hg17|chr3 (32779213-32779364) | |
| 411-547, gnl|Hg17|chr3 (32779229-32779365) | |
| 411-547, gnl|loxAfr1|scaffold_73 (229522-229674) | |
| 411-547, gnl|mm7|chr9 (114249949-114249798) | |
| 411-547, gnl|Mm7|chr9 (114249931-114249795) | |
| 411-547, gnl|monDom2|scaffold_7 (88225335-88225498) | |
| 411-547, gnl|oryCun1|scaffold_207346 (5632-5481) | |
| 411-547, gnl|panTro1|chr2_random (32938076-32937925) | |
| 411-547, gnl|rheMac2|chr2 (175246912-175247063) | |
| 411-547, gnl|rn3|chr8 (119034986-119034835) | |
| 411-547, gnl|tetNig1|chrUn_random (32252342-32252203) | |
| 411-547, gnl|xenTro1|scaffold_319 (1204317-1204158) | |
| 622-768, gnl|bosTau2|chr22 (4723783-4723929) | |
| 622-768, gnl|canFam2|chr23 (6995775-6995625) | |
| 622-768, gnl|danRer3|chr21 (16444009-16444172) | |
| 622-768, gnl|echTel1|scaffold_209069 (3661-3794) | |
| 622-768, gnl|fr1|chrUn (96456281-96456432) | |
| 622-768, gnl|galGal2|chr2 (39641325-39641454) | |
| 622-768, gnl|hg17|chr3 (32789925-32790077) | |
| 622-768, gnl|Hg17|chr3 (32789952-32790101) | |
| 622-768, gnl|mm7|chr9 (114242818-114242666) | |
| 622-768, gnl|Mm7|chr9 (114242789-114242640) | |
| 622-768, gnl|monDom2|scaffold_7 (88232071-88232222) | |
| 622-768, gnl|oryCun1|scaffold_207346 (218-67) | |
| 622-768, gnl|panTro1|chr2 (33744899-33745051) | |
| 622-768, gnl|rheMac2|chr2 (175258062-175258214) | |
| 622-768, gnl|rn3|chr8 (119027390-119027237) | |
| 622-768, gnl|tetNig1|chrUn_random (32250763-32250627) | |
| 622-768, gnl|xenTro1|scaffold_319 (1193380-1193225) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-215, gnl|bosTau2|chr22 (4700301-4700477) | |
| 39-215, gnl|canFam2|chr23 (7026780-7026581) | |
| 39-215, gnl|danRer3|chr21 (16431886-16432090) | |
| 39-215, gnl|dasNov1|scaffold_83788 (3312-3113) | |
| 39-215, gnl|echTel1|scaffold_316121 (42749-42945) | |
| 39-215, gnl|fr1|chrUn (96454319-96454502) | |
| 39-215, gnl|galGal2|chr2 (39629673-39629872) | |
| 39-215, gnl|hg17|chr3 (32751295-32751494) | |
| 39-215, gnl|Hg17|chr3 (32751296-32751472) | |
| 39-215, gnl|loxAfr1|scaffold_6174 (27736-27934) | |
| 39-215, gnl|mm7|chr9 (114264899-114264718) | |
| 39-215, gnl|Mm7|chr9 (114264896-114264720) | |
| 39-215, gnl|monDom2|scaffold_7 (88199714-88199905) | |
| 39-215, gnl|oryCun1|scaffold_120840 (5797-5600) | |
| 39-215, gnl|panTro1|chr2 (33762237-33762436) | |
| 39-215, gnl|rheMac2|chr2 (175212893-175213092) | |
| 39-215, gnl|rn3|chr8 (119050300-119050103) | |
| 39-215, gnl|tetNig1|chrUn_random (32252986-32252802) | |
| 39-215, gnl|xenTro1|scaffold_319 (1226720-1226539) | |
| 411-547, gnl|bosTau2|chr22 (4719899-4720035) | |
| 411-547, gnl|canFam2|chr23 (7003287-7003140) | |
| 411-547, gnl|danRer3|chr21 (16439207-16439356) | |
| 411-547, gnl|dasNov1|scaffold_13383 (48950-49101) | |
| 411-547, gnl|echTel1|scaffold_312842 (40474-40323) | |
| 411-547, gnl|fr1|chrUn (96454953-96455102) | |
| 411-547, gnl|galGal2|chr2 (39638467-39638627) | |
| 411-547, gnl|hg17|chr3 (32779213-32779364) | |
| 411-547, gnl|Hg17|chr3 (32779229-32779365) | |
| 411-547, gnl|loxAfr1|scaffold_73 (229522-229674) | |
| 411-547, gnl|mm7|chr9 (114249949-114249798) | |
| 411-547, gnl|Mm7|chr9 (114249931-114249795) | |
| 411-547, gnl|monDom2|scaffold_7 (88225335-88225498) | |
| 411-547, gnl|oryCun1|scaffold_207346 (5632-5481) | |
| 411-547, gnl|panTro1|chr2_random (32938076-32937925) | |
| 411-547, gnl|rheMac2|chr2 (175246912-175247063) | |
| 411-547, gnl|rn3|chr8 (119034986-119034835) | |
| 411-547, gnl|tetNig1|chrUn_random (32252342-32252203) | |
| 411-547, gnl|xenTro1|scaffold_319 (1204317-1204158) | |
| 622-768, gnl|bosTau2|chr22 (4723783-4723929) | |
| 622-768, gnl|canFam2|chr23 (6995775-6995625) | |
| 622-768, gnl|danRer3|chr21 (16444009-16444172) | |
| 622-768, gnl|echTel1|scaffold_209069 (3661-3794) | |
| 622-768, gnl|fr1|chrUn (96456281-96456432) | |
| 622-768, gnl|galGal2|chr2 (39641325-39641454) | |
| 622-768, gnl|hg17|chr3 (32789925-32790077) | |
| 622-768, gnl|Hg17|chr3 (32789952-32790101) | |
| 622-768, gnl|mm7|chr9 (114242818-114242666) | |
| 622-768, gnl|Mm7|chr9 (114242789-114242640) | |
| 622-768, gnl|monDom2|scaffold_7 (88232071-88232222) | |
| 622-768, gnl|oryCun1|scaffold_207346 (218-67) | |
| 622-768, gnl|panTro1|chr2 (33744899-33745051) | |
| 622-768, gnl|rheMac2|chr2 (175258062-175258214) | |
| 622-768, gnl|rn3|chr8 (119027390-119027237) | |
| 622-768, gnl|tetNig1|chrUn_random (32250763-32250627) | |
| 622-768, gnl|xenTro1|scaffold_319 (1193380-1193225) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) |