Non-Coding RNA Search

Ss1.1-Pig2-49A16.5

Sequence:


               
               CCTGCAGCCCCTCGCCGTGCTCGAGCTGCTCCAGGGCCTGGAATTCCTGGGCTGCATTAA
AAAGCGCCTGCTGAGGAAGCCCCGGAGCGTGTCGCTCTTCTCCAAGCCAGCGATCGAAGA
GGTGGAGGCGCCCTCGAGCCTGAGCGAGAACCTCACGGTGTCCTACGAGCCCACGCTGGA
CTGCACCATCCGCCTGGGCCGTGTCTTCCCCAGCGAGGCCAACTGGAACAAGTGGGTCCA
CCTCTGAGGCCCCCGTGGCCCTCGCGACCCGCCTGTCCCTCTGCCGACCCTGAGAGAGAG
TGTGCTCTCCTGGGGGGCCTCTGCCCACTGTGGGGTGCAGCCTGGCGAGGTTGGGGTGCA
GAGGGCCCTGCCCCCACCCGCCAATTGTACAGAGACCCTGTGCCCAGCCTGAGGCCTCAA
ATGCTGTTTCCTGGCCCGGAACCTCCTGGAAGGAGGGCCACCTGCCCACCTGCCCCCAGG
CCCTTCCCGGGCTGCCCCAAGGGACCTCGCTTCGTCACCTCCTCCTATTCCCGGGGCCTC
GGCTGAGCCGCCCACCCAGCTCTCCGGAACCTGGGTTGTGGTGAGGTTGAGAAGCCCCCA
GGGGGCCCGTCCTCCGAGGGCTTCCGAGCTGAGGCTGCCTTTCGGGAGCAGAGCCGCCGG
CCCAGGCCTGGAGCCCTGTATGGACATCTGCTGGCCGGCGAGGGGCTGGGAGTTCAGGAC
ACGGGGCTCTGCCCCGTCCACACACACCTCGCCCTGCAGCTTCCAGCCACCCCACTGCGG
AGGACCCCCCCCTGCTCCCCAGAAAGCCCCCGTGGCCTGAGGGGCAGGGCCTCCCGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCAGCCCCTCGCCGTGCTCGAGCTGCTCCAGGGCCTGGAATTCCTGGGCTGCATTAA
AAAGCGCCTGCTGAGGAAGCCCCGGAGCGTGTCGCTCTTCTCCAAGCCAGCGATCGAAGA
GGTGGAGGCGCCCTCGAGCCTGAGCGAGAACCTCACGGTGTCCTACGAGCCCACGCTGGA
CTGCACCATCCGCCTGGGCCGTGTCTTCCCCAGCGAGGCCAACTGGAACAAGTGGGTCCA
CCTCTGAGGCCCCCGTGGCCCTCGCGACCCGCCTGTCCCTCTGCCGACCCTGAGAGAGAG
TGTGCTCTCCTGGGGGGCCTCTGCCCACTGTGGGGTGCAGCCTGGCGAGGTTGGGGTGCA
GAGGGCCCTGCCCCCACCCGCCAATTGTACAGAGACCCTGTGCCCAGCCTGAGGCCTCAA
ATGCTGTTTCCTGGCCCGGAACCTCCTGGAAGGAGGGCCACCTGCCCACCTGCCCCCAGG
CCCTTCCCGGGCTGCCCCAAGGGACCTCGCTTCGTCACCTCCTCCTATTCCCGGGGCCTC
GGCTGAGCCGCCCACCCAGCTCTCCGGAACCTGGGTTGTGGTGAGGTTGAGAAGCCCCCA
GGGGGCCCGTCCTCCGAGGGCTTCCGAGCTGAGGCTGCCTTTCGGGAGCAGAGCCGCCGG
CCCAGGCCTGGAGCCCTGTATGGACATCTGCTGGCCGGCGAGGGGCTGGGAGTTCAGGAC
ACGGGGCTCTGCCCCGTCCACACACACCTCGCCCTGCAGCTTCCAGCCACCCCACTGCGG
AGGACCCCCCCCTGCTCCCCAGAAAGCCCCCGTGGCCTGAGGGGCAGGGCCTCCCGGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30962897|gb|AAH52642.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30962897|gb|AAH52642.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               504-840, - strand, RNAz p=0.999445

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               504-840, - strand, RNAz p=0.999445

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               29-273, gnl|bosTau2|chr25 (21598616-21598378)
               

               
               29-273, gnl|Hg17|chr16 (27380390-27380155)
               

               
               29-273, gnl|Mm7|chr7 (121738297-121738046)
               


               
               305-840, gnl|bosTau2|chr25 (21598369-21597827)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-273, gnl|bosTau2|chr25 (21598616-21598378)
               

               
               29-273, gnl|Hg17|chr16 (27380390-27380155)
               

               
               29-273, gnl|Mm7|chr7 (121738297-121738046)
               


               
               305-840, gnl|bosTau2|chr25 (21598369-21597827)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nca (0.136874)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	29-273, gnl\|bosTau2\|chr25 (21598616-21598378)
	29-273, gnl\|Hg17\|chr16 (27380390-27380155)
	29-273, gnl\|Mm7\|chr7 (121738297-121738046)

	305-840, gnl\|bosTau2\|chr25 (21598369-21597827)