Non-Coding RNA Search

Ss1.1-Pig2-49C12.5

Sequence:


               
               GCCAAGCTGCTGAAGCGGCAGCAGCGAATGATCAAGAACCGGGAGTCAGCCTGCCAGTCC
CGGAGGAAGAAGAAGGAGTATCTGCAGGGGCTGGAGGCGCGGCTGCAGGCCGTGCTGGCC
GACAACCAGCAGCTCCGGCGGGAGAATGCTGCCCTCCGCCGGCGGCTGGAGGCTCTGCTG
GCCGAGAACAGCGAGCTCAGGTTGGGGTCTGGAAACAGGAAGGTGGTCTGCGTCATGGTC
TTCCTTCTCTTCATCGCCTTCAACTTCGGGCCCGTCAGCATCAGTGAGCCTCCGCCGGCA
CCCATCTCTCCTCGGACGAGCAGAGAAGAGCCTCGACCACGCAGACACTTGCTGGAGTTC
TCAGCACAGGAGCCAGCCGAGCCCCCCCGGCGGCCCTCCCAGGGCCTGGAGGAGCCCCAG
CCCAGCCCTGCAGGCCGGCCAAGTTTCAGGAACCTGACAGCCTTCCCTGGGGCCGCCAAG
GAGCTGCTGCTGAGAGACCTGGACCAGCTCTTCCTCTCCTCTGATTGCCGGCACTTCAAC
CGAACTGAGTCCTTGAGGCTTGCTGACGAGCTGAGTGGCTGGGTCCAGCGGCACCAGAGG
GGCCGGCGGAAGATCCCCCAGAGGGCCCAGGAGAGGCAGAAGTCTCAGCTACGGAAGAAG
TCACCTCCAATTAAGGCAGCAGTCCCCACCCAATCCCCTGGGCCCCCAGAAAGGGACACT
GCGCGCCAACTGCAGCTGTATCGCCACCCAGACCGTTCACAGCCAGAGTTCCTGGATGCA
ATCGACCGACGGGAAGACACGCTTTACGTTGTCTCCTTCCGAAGGGACCACCTGTTGCTC
CCAGCCATCAGCCACAACAAGACCTCTCGGCCCAAGATGTCCCTGGTGATGCCTGCCATG
GCCCCCAATGGTAATTCTTTCCCGGCCATGGGGTGGGGCCCTGACATTGAGGAGGGGAGA
ATGGCTTCTGGATGCAGCACATCTGGATTCCGGGGCCCAGATGTGTGGTTGCCACAGCGA
CCTCGGTCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAGCTGCTGAAGCGGCAGCAGCGAATGATCAAGAACCGGGAGTCAGCCTGCCAGTCC
CGGAGGAAGAAGAAGGAGTATCTGCAGGGGCTGGAGGCGCGGCTGCAGGCCGTGCTGGCC
GACAACCAGCAGCTCCGGCGGGAGAATGCTGCCCTCCGCCGGCGGCTGGAGGCTCTGCTG
GCCGAGAACAGCGAGCTCAGGTTGGGGTCTGGAAACAGGAAGGTGGTCTGCGTCATGGTC
TTCCTTCTCTTCATCGCCTTCAACTTCGGGCCCGTCAGCATCAGTGAGCCTCCGCCGGCA
CCCATCTCTCCTCGGACGAGCAGAGAAGAGCCTCGACCACGCAGACACTTGCTGGAGTTC
TCAGCACAGGAGCCAGCCGAGCCCCCCCGGCGGCCCTCCCAGGGCCTGGAGGAGCCCCAG
CCCAGCCCTGCAGGCCGGCCAAGTTTCAGGAACCTGACAGCCTTCCCTGGGGCCGCCAAG
GAGCTGCTGCTGAGAGACCTGGACCAGCTCTTCCTCTCCTCTGATTGCCGGCACTTCAAC
CGAACTGAGTCCTTGAGGCTTGCTGACGAGCTGAGTGGCTGGGTCCAGCGGCACCAGAGG
GGCCGGCGGAAGATCCCCCAGAGGGCCCAGGAGAGGCAGAAGTCTCAGCTACGGAAGAAG
TCACCTCCAATTAAGGCAGCAGTCCCCACCCAATCCCCTGGGCCCCCAGAAAGGGACACT
GCGCGCCAACTGCAGCTGTATCGCCACCCAGACCGTTCACAGCCAGAGTTCCTGGATGCA
ATCGACCGACGGGAAGACACGCTTTACGTTGTCTCCTTCCGAAGGGACCACCTGTTGCTC
CCAGCCATCAGCCACAACAAGACCTCTCGGCCCAAGATGTCCCTGGTGATGCCTGCCATG
GCCCCCAATGGTAATTCTTTCCCGGCCATGGGGTGGGGCCCTGACATTGAGGAGGGGAGA
ATGGCTTCTGGATGCAGCACATCTGGATTCCGGGGCCCAGATGTGTGGTTGCCACAGCGA
CCTCGGTCCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1688083|gb|AAC50883.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1688083|gb|AAC50883.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-186, + strand, RNAz p=0.924964
               

               
               290-393, - strand, RNAz p=0.827025

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-186, + strand, RNAz p=0.924964
               

               
               290-393, - strand, RNAz p=0.827025

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-186, gnl|bosTau2|chr23 (23742342-23742527)
               

               
               1-186, gnl|Hg17|chr6 (32194896-32194711)
               

               
               1-186, gnl|Mm7|chr17 (32737015-32737200)
               


               
               276-450, gnl|bosTau2|chr23 (23743165-23743348)
               

               
               276-450, gnl|canFam2|chr12 (4520519-4520860)
               

               
               276-450, gnl|echTel1|scaffold_297190 (2076-1750)
               

               
               276-450, gnl|hg17|chr6 (32193599-32193947)
               

               
               276-450, gnl|Hg17|chr6 (32193796-32193613)
               

               
               276-450, gnl|loxAfr1|scaffold_22180 (16030-16372)
               

               
               276-450, gnl|mm7|chr17 (32738292-32737952)
               

               
               276-450, gnl|Mm7|chr17 (32738098-32738281)
               

               
               276-450, gnl|monDom2|scaffold_42 (17231617-17231285)
               

               
               276-450, gnl|oryCun1|scaffold_210031 (92151-92462)
               

               
               276-450, gnl|panTro1|chr5 (32559149-32559477)
               

               
               276-450, gnl|rheMac2|chr4 (31742976-31743324)
               

               
               276-450, gnl|rn3|chr20 (4194707-4195036)
               


               
               825-951, gnl|bosTau2|chr23 (23744808-23744938)
               

               
               825-951, gnl|Hg17|chr6 (32192320-32192204)
               

               
               825-951, gnl|Mm7|chr17 (32739373-32739506)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr23 (23742342-23742527)
               

               
               1-186, gnl|Hg17|chr6 (32194896-32194711)
               

               
               1-186, gnl|Mm7|chr17 (32737015-32737200)
               


               
               276-450, gnl|bosTau2|chr23 (23743165-23743348)
               

               
               276-450, gnl|canFam2|chr12 (4520519-4520860)
               

               
               276-450, gnl|echTel1|scaffold_297190 (2076-1750)
               

               
               276-450, gnl|hg17|chr6 (32193599-32193947)
               

               
               276-450, gnl|Hg17|chr6 (32193796-32193613)
               

               
               276-450, gnl|loxAfr1|scaffold_22180 (16030-16372)
               

               
               276-450, gnl|mm7|chr17 (32738292-32737952)
               

               
               276-450, gnl|Mm7|chr17 (32738098-32738281)
               

               
               276-450, gnl|monDom2|scaffold_42 (17231617-17231285)
               

               
               276-450, gnl|oryCun1|scaffold_210031 (92151-92462)
               

               
               276-450, gnl|panTro1|chr5 (32559149-32559477)
               

               
               276-450, gnl|rheMac2|chr4 (31742976-31743324)
               

               
               276-450, gnl|rn3|chr20 (4194707-4195036)
               


               
               825-951, gnl|bosTau2|chr23 (23744808-23744938)
               

               
               825-951, gnl|Hg17|chr6 (32192320-32192204)
               

               
               825-951, gnl|Mm7|chr17 (32739373-32739506)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	1-186, + strand, RNAz p=0.924964
	290-393, - strand, RNAz p=0.827025

	1-186, gnl\|bosTau2\|chr23 (23742342-23742527)
	1-186, gnl\|Hg17\|chr6 (32194896-32194711)
	1-186, gnl\|Mm7\|chr17 (32737015-32737200)

	276-450, gnl\|bosTau2\|chr23 (23743165-23743348)
	276-450, gnl\|canFam2\|chr12 (4520519-4520860)
	276-450, gnl\|echTel1\|scaffold_297190 (2076-1750)
	276-450, gnl\|hg17\|chr6 (32193599-32193947)
	276-450, gnl\|Hg17\|chr6 (32193796-32193613)
	276-450, gnl\|loxAfr1\|scaffold_22180 (16030-16372)
	276-450, gnl\|mm7\|chr17 (32738292-32737952)
	276-450, gnl\|Mm7\|chr17 (32738098-32738281)
	276-450, gnl\|monDom2\|scaffold_42 (17231617-17231285)
	276-450, gnl\|oryCun1\|scaffold_210031 (92151-92462)
	276-450, gnl\|panTro1\|chr5 (32559149-32559477)
	276-450, gnl\|rheMac2\|chr4 (31742976-31743324)
	276-450, gnl\|rn3\|chr20 (4194707-4195036)

	825-951, gnl\|bosTau2\|chr23 (23744808-23744938)
	825-951, gnl\|Hg17\|chr6 (32192320-32192204)
	825-951, gnl\|Mm7\|chr17 (32739373-32739506)

	mcp (0.170648)
	csp (0.161186)
	pla (0.133672)
	eep (0.122564)
	ebs (0.118301)
	cty (0.10408)