Non-Coding RNA Search

Ss1.1-Pig2-49E23.5

Sequence:


               
               GCAGTTCAACGCCCCCACGGGGGTGGCCGTGGACTCCAACGGGAACATCATCGTGGCCGA
CTGGGGCAACAGCCGCATCCAGGTGTTCGACAGCTCCGGCTCCTTCCTGTCCTATATCAA
CACATCTGCAGAGCCACTGTATGGCCCACAGGGCCTGGCACTGACCTCGGACGGCCACGT
GGTGGTGGCCGACGCTGGCAACCACTGCTTCAAGGCCTATCGCTACCTCCAGTAGCTGCC
CCGGGGCCCTGCCTGGCTCGCGGAGGGACGGACATCGGGGATGACTGGACAGGATGGCCT
GGCCGGGAGGCGGGCCGCACCTGGCAGCACTGAATGTGGGCTGCGGGCGGGGGCGCGCCC
CGGGCCCCCCCTCCCCCCTCCCGACCCCACGGTTGCACTTTATTTATTCGGTTCTTGCTT
TGGTGACTGGGTGGGCCCCGACCGCGGTCCCAGGATGTGTGCAGAGCTCCGCCCTCCTCC
CCGTACACACCTCCCGTCCCTCAGTCTGCCCGCCGCCCCCAGCCTGGGGCCGGAACAGCC
TCCCAGTCCTGGGCAGACGTCCTCGGGTTGTCTCCCTAGCACCCCGTACACACTGACAGA
GACAGCAATACCCCACCCCCATATTAAATAAACGTCTCCACCACCACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTTCAACGCCCCCACGGGGGTGGCCGTGGACTCCAACGGGAACATCATCGTGGCCGA
CTGGGGCAACAGCCGCATCCAGGTGTTCGACAGCTCCGGCTCCTTCCTGTCCTATATCAA
CACATCTGCAGAGCCACTGTATGGCCCACAGGGCCTGGCACTGACCTCGGACGGCCACGT
GGTGGTGGCCGACGCTGGCAACCACTGCTTCAAGGCCTATCGCTACCTCCAGTAGCTGCC
CCGGGGCCCTGCCTGGCTCGCGGAGGGACGGACATCGGGGATGACTGGACAGGATGGCCT
GGCCGGGAGGCGGGCCGCACCTGGCAGCACTGAATGTGGGCTGCGGGCGGGGGCGCGCCC
CGGGCCCCCCCTCCCCCCTCCCGACCCCACGGTTGCACTTTATTTATTCGGTTCTTGCTT
TGGTGACTGGGTGGGCCCCGACCGCGGTCCCAGGATGTGTGCAGAGCTCCGCCCTCCTCC
CCGTACACACCTCCCGTCCCTCAGTCTGCCCGCCGCCCCCAGCCTGGGGCCGGAACAGCC
TCCCAGTCCTGGGCAGACGTCCTCGGGTTGTCTCCCTAGCACCCCGTACACACTGACAGA
GACAGCAATACCCCACCCCCATATTAAATAAACGTCTCCACCACCACAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               119-238, - strand, RNAz p=0.625367
               

               
               506-646, - strand, RNAz p=0.857658

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-238, - strand, RNAz p=0.625367
               

               
               506-646, - strand, RNAz p=0.857658

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               409-557, - strand, RNAmicro p=0.984484
               

               
               229-331, + strand, RNAmicro p=0.973719

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               409-557, - strand, RNAmicro p=0.984484
               

               
               229-331, + strand, RNAmicro p=0.973719

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               79-646, gnl|bosTau2|chr15 (28720775-28720194)
               

               
               79-646, gnl|Hg17|chr11 (6426990-6426419)
               

               
               79-646, gnl|Mm7|chr7 (101667635-101667071)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-646, gnl|bosTau2|chr15 (28720775-28720194)
               

               
               79-646, gnl|Hg17|chr11 (6426990-6426419)
               

               
               79-646, gnl|Mm7|chr7 (101667635-101667071)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

	119-238, - strand, RNAz p=0.625367
	506-646, - strand, RNAz p=0.857658

	409-557, - strand, RNAmicro p=0.984484
	229-331, + strand, RNAmicro p=0.973719

	79-646, gnl\|bosTau2\|chr15 (28720775-28720194)
	79-646, gnl\|Hg17\|chr11 (6426990-6426419)
	79-646, gnl\|Mm7\|chr7 (101667635-101667071)