Non-Coding RNA Search

Ss1.1-Pig2-49F01.5

Sequence:


               
               GGAACTGAACAACTCCACCATCTGGCAGTCCCTACACAGGGCCCAGGACGAGCTGGGCCT
GCAGACGGCCCTCACTGACGTGCCTGCCTGGCCCAAACGTGGGTCCTGCACAATCAGCAG
CTTCCTGCCTGGGCTAAGAGCGCCATGCCGGGAAGGGAGGTCTGTGATGGGAGCGTGGAG
CATGCCATCTCTGCCGTCTGCCAAGCCCCTGGCGTCATCCCCAAGGCAACACGACTTGAA
ACACCACAGAGCAATCTGAATCAACAAGTGGAGGTGGGGCCTAGGGAGCTCTATGCAAAC
CAACTCGGAGTCAGTGCCATGCATCTCACAAACGTGGCCAGAGGCTCTCCAGAAAGGGCT
GCTCACAGCAACCAACCACCTCGGCTCCCCCTGCCCACAAGGTCAAAGGAGAAGAAAGCA
TTCGGCCGCAGCTCCTAGCCGTCCTTAAAGGGCCACAGGCAATGGACAGGCCCAGAGGGA
CCCTCATCATGCAGGCCTCCTCCTCCTGCCTGGGGCCCGGGCGTCCCGCAGGGCTCCAGA
CATGGGGGCTGGCCAGGAGCAAGGGAAGAGAAGGCGGGGACTAGATCTCGGCAGTGCCCT
AAAGCCTCGCTCACTGCCCTGGAGTGAGGTACCCACTGTGACTTGTGTCCTGGAGGCCAC
TGCCACTCAAATCTCGAGCCTCCTGGAGGCAGCCAGCAAGCCGGCAGCCTTCCCGCCTCC
CCACGCCCGGCCCAGCGCCCCCACAACACAGTCTGCGCAGAGAAGCAAAGTGCAGAGCAA
GGGGTCGCTTGCCTTTGTTGCCATAGGTCCTGGCGCAGTGGAACGCTGCTCCCCCATTCG
GGATGGGCTCCTGGTGCCTGGAGACCTGGGGAAGGGGAACACCGTGGTGGGTTTTAACAT
GGACCTTTAAGTAGGAGGCAGAGGAGAAACCTAAACAAGATAAAAGGAGATGAGATCCCG
CGGCCAGCACACAGATACCTCTCTGCTTCCCCCACGCCTCTCCTCCGGCGGCGGTGGCTA
GCCTTCCTAGAAGGGGCCCCTCCTTGGCTCAGAAACGCTGCAACCACAGGAGCCACCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACTGAACAACTCCACCATCTGGCAGTCCCTACACAGGGCCCAGGACGAGCTGGGCCT
GCAGACGGCCCTCACTGACGTGCCTGCCTGGCCCAAACGTGGGTCCTGCACAATCAGCAG
CTTCCTGCCTGGGCTAAGAGCGCCATGCCGGGAAGGGAGGTCTGTGATGGGAGCGTGGAG
CATGCCATCTCTGCCGTCTGCCAAGCCCCTGGCGTCATCCCCAAGGCAACACGACTTGAA
ACACCACAGAGCAATCTGAATCAACAAGTGGAGGTGGGGCCTAGGGAGCTCTATGCAAAC
CAACTCGGAGTCAGTGCCATGCATCTCACAAACGTGGCCAGAGGCTCTCCAGAAAGGGCT
GCTCACAGCAACCAACCACCTCGGCTCCCCCTGCCCACAAGGTCAAAGGAGAAGAAAGCA
TTCGGCCGCAGCTCCTAGCCGTCCTTAAAGGGCCACAGGCAATGGACAGGCCCAGAGGGA
CCCTCATCATGCAGGCCTCCTCCTCCTGCCTGGGGCCCGGGCGTCCCGCAGGGCTCCAGA
CATGGGGGCTGGCCAGGAGCAAGGGAAGAGAAGGCGGGGACTAGATCTCGGCAGTGCCCT
AAAGCCTCGCTCACTGCCCTGGAGTGAGGTACCCACTGTGACTTGTGTCCTGGAGGCCAC
TGCCACTCAAATCTCGAGCCTCCTGGAGGCAGCCAGCAAGCCGGCAGCCTTCCCGCCTCC
CCACGCCCGGCCCAGCGCCCCCACAACACAGTCTGCGCAGAGAAGCAAAGTGCAGAGCAA
GGGGTCGCTTGCCTTTGTTGCCATAGGTCCTGGCGCAGTGGAACGCTGCTCCCCCATTCG
GGATGGGCTCCTGGTGCCTGGAGACCTGGGGAAGGGGAACACCGTGGTGGGTTTTAACAT
GGACCTTTAAGTAGGAGGCAGAGGAGAAACCTAAACAAGATAAAAGGAGATGAGATCCCG
CGGCCAGCACACAGATACCTCTCTGCTTCCCCCACGCCTCTCCTCCGGCGGCGGTGGCTA
GCCTTCCTAGAAGGGGCCCCTCCTTGGCTCAGAAACGCTGCAACCACAGGAGCCACCTGG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               10-124, - strand, RNAz p=0.799224
               

               
               497-756, - strand, RNAz p=0.66185
               

               
               797-956, + strand, RNAz p=0.655643

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-124, - strand, RNAz p=0.799224
               

               
               497-756, - strand, RNAz p=0.66185
               

               
               797-956, + strand, RNAz p=0.655643

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-375, gnl|bosTau2|chr17 (43604835-43605208)
               

               
               1-375, gnl|canFam2|chr26 (27308908-27310049)
               

               
               1-375, gnl|echTel1|scaffold_55856 (2045-1075)
               

               
               1-375, gnl|hg17|chr22 (30047877-30049022)
               

               
               1-375, gnl|Hg17|chr22 (30048464-30048873)
               

               
               1-375, gnl|mm7|chr11 (3259625-3258616)
               

               
               1-375, gnl|Mm7|chr11 (3259104-3258751)
               

               
               1-375, gnl|oryCun1|scaffold_201271 (51435-52565)
               

               
               1-375, gnl|panTro1|chr23 (30148774-30149920)
               

               
               1-375, gnl|rheMac2|chr10 (75217262-75218407)
               

               
               1-375, gnl|rn3|chr14 (83933093-83932033)
               


               
               379-1076, gnl|bosTau2|chr17 (43605235-43605924)
               

               
               379-1076, gnl|Hg17|chr22 (30048900-30049625)
               

               
               379-1076, gnl|Mm7|chr11 (3258738-3258063)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-375, gnl|bosTau2|chr17 (43604835-43605208)
               

               
               1-375, gnl|canFam2|chr26 (27308908-27310049)
               

               
               1-375, gnl|echTel1|scaffold_55856 (2045-1075)
               

               
               1-375, gnl|hg17|chr22 (30047877-30049022)
               

               
               1-375, gnl|Hg17|chr22 (30048464-30048873)
               

               
               1-375, gnl|mm7|chr11 (3259625-3258616)
               

               
               1-375, gnl|Mm7|chr11 (3259104-3258751)
               

               
               1-375, gnl|oryCun1|scaffold_201271 (51435-52565)
               

               
               1-375, gnl|panTro1|chr23 (30148774-30149920)
               

               
               1-375, gnl|rheMac2|chr10 (75217262-75218407)
               

               
               1-375, gnl|rn3|chr14 (83933093-83932033)
               


               
               379-1076, gnl|bosTau2|chr17 (43605235-43605924)
               

               
               379-1076, gnl|Hg17|chr22 (30048900-30049625)
               

               
               379-1076, gnl|Mm7|chr11 (3258738-3258063)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.239292)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)

	10-124, - strand, RNAz p=0.799224
	497-756, - strand, RNAz p=0.66185
	797-956, + strand, RNAz p=0.655643

	1-375, gnl\|bosTau2\|chr17 (43604835-43605208)
	1-375, gnl\|canFam2\|chr26 (27308908-27310049)
	1-375, gnl\|echTel1\|scaffold_55856 (2045-1075)
	1-375, gnl\|hg17\|chr22 (30047877-30049022)
	1-375, gnl\|Hg17\|chr22 (30048464-30048873)
	1-375, gnl\|mm7\|chr11 (3259625-3258616)
	1-375, gnl\|Mm7\|chr11 (3259104-3258751)
	1-375, gnl\|oryCun1\|scaffold_201271 (51435-52565)
	1-375, gnl\|panTro1\|chr23 (30148774-30149920)
	1-375, gnl\|rheMac2\|chr10 (75217262-75218407)
	1-375, gnl\|rn3\|chr14 (83933093-83932033)

	379-1076, gnl\|bosTau2\|chr17 (43605235-43605924)
	379-1076, gnl\|Hg17\|chr22 (30048900-30049625)
	379-1076, gnl\|Mm7\|chr11 (3258738-3258063)