Non-Coding RNA Search

Ss1.1-Pig2-49K20.5

Sequence:


               
               CGCCTACCTCCCATCCATTGGAGGCGTGGACGCCAGCTGTGTCAGCCCCTGCGTCAGCCC
CACCGCCAGCCCCCGCCACAGACACGTGCCACCCTCCTTCCGAGTTATGGTCTCGGGCCT
GTAAGTGGGGGAGGCCTGGGGCTGGGGCCTCCCCCGTGACGGAACCACACGGAGCAGAGG
CGTCTGCTACAGGAACACTGTCAGCTCTGGCTGCAGAGAAACTGGCGCCACGGCTGGCCT
TGCGGGACTACTCGGATGGCACTCGGTGCAGATGGGGGGCACTTGGCACCTGACCTTGCG
CCTTATTTGTGAAGTTTTTATTCTTTCACAAAGAAGAGGAATGGAAATGACCTCTTCCTT
AATGTCTGCAAAGGAGGAGGAGCTGGGATACATGAAACTTGGCAAAAAAAAAAATCCTAG
ACAAGGAGAAACTTACTAGAACTCCAGCTAGAAGTCACTGAGTGGTCCTGAGCAGCCCTG
AAAAGAGGCAAGGGGCTTCTGGAGAACCGCCTCTGCCTCTGCACACATGCCACTGGCTGT
GGCTCCCAGGCCAGCCCTTCTCCACTCTGGGGAAGGAGACAGGCAGGGCAGCCAGGCTCC
CAGCTGCCAGTCCAGCCAACCCCAGACTTCCTGGAACAGGGAGTCTGCAGGAAGGGCAGC
TGGGCACAGCTCTGCAGCGAGCGGCCTGAGGGCTGGGCAACCGAGGGCTGGGATACCGAG
CAGGCTGACTCGCATGCCTCCCAGTGGGACCTTACTCTCTGATAAATGCCACCCATTAAC
ACAATAACACCCGTTCTGGGACCGTGGGGATTTAGGGCACGTTGCTGCAGACCCACTCTG
CAGCACTCACCCACAGTCGGCCATGCACCCACCACGTTGGCCATGTCCTTGTGTTTGTAT
CAGGTGTTCCCCATAATAAGGGGGCCACCGGAGCTAATCATGGAATGTCTGTTCCCAGCA
AACATGATAAAGATTGTGCACTTTAACCTCTCTCATCAGGGGCCCAAGGCTGGCTGGGGT
TTGGTTTTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCTACCTCCCATCCATTGGAGGCGTGGACGCCAGCTGTGTCAGCCCCTGCGTCAGCCC
CACCGCCAGCCCCCGCCACAGACACGTGCCACCCTCCTTCCGAGTTATGGTCTCGGGCCT
GTAAGTGGGGGAGGCCTGGGGCTGGGGCCTCCCCCGTGACGGAACCACACGGAGCAGAGG
CGTCTGCTACAGGAACACTGTCAGCTCTGGCTGCAGAGAAACTGGCGCCACGGCTGGCCT
TGCGGGACTACTCGGATGGCACTCGGTGCAGATGGGGGGCACTTGGCACCTGACCTTGCG
CCTTATTTGTGAAGTTTTTATTCTTTCACAAAGAAGAGGAATGGAAATGACCTCTTCCTT
AATGTCTGCAAAGGAGGAGGAGCTGGGATACATGAAACTTGGCAAAAAAAAAAATCCTAG
ACAAGGAGAAACTTACTAGAACTCCAGCTAGAAGTCACTGAGTGGTCCTGAGCAGCCCTG
AAAAGAGGCAAGGGGCTTCTGGAGAACCGCCTCTGCCTCTGCACACATGCCACTGGCTGT
GGCTCCCAGGCCAGCCCTTCTCCACTCTGGGGAAGGAGACAGGCAGGGCAGCCAGGCTCC
CAGCTGCCAGTCCAGCCAACCCCAGACTTCCTGGAACAGGGAGTCTGCAGGAAGGGCAGC
TGGGCACAGCTCTGCAGCGAGCGGCCTGAGGGCTGGGCAACCGAGGGCTGGGATACCGAG
CAGGCTGACTCGCATGCCTCCCAGTGGGACCTTACTCTCTGATAAATGCCACCCATTAAC
ACAATAACACCCGTTCTGGGACCGTGGGGATTTAGGGCACGTTGCTGCAGACCCACTCTG
CAGCACTCACCCACAGTCGGCCATGCACCCACCACGTTGGCCATGTCCTTGTGTTTGTAT
CAGGTGTTCCCCATAATAAGGGGGCCACCGGAGCTAATCATGGAATGTCTGTTCCCAGCA
AACATGATAAAGATTGTGCACTTTAACCTCTCTCATCAGGGGCCCAAGGCTGGCTGGGGT
TTGGTTTTGTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               O94794_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               O94794_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               309-691, + strand, RNAz p=0.994456
               

               
               887-1001, - strand, RNAz p=0.666972

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-691, + strand, RNAz p=0.994456
               

               
               887-1001, - strand, RNAz p=0.666972

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_005458, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005458, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-691, gnl|bosTau2|chr8 (33420394-33421090)
               

               
               1-691, gnl|Hg17|chr9 (98132544-98131823)
               

               
               1-691, gnl|Mm7|chr4 (46678721-46678067)
               


               
               770-1032, gnl|bosTau2|chr8 (33421109-33421355)
               

               
               770-1032, gnl|Hg17|chr9 (98131745-98131477)
               

               
               770-1032, gnl|Mm7|chr4 (46677989-46677727)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-691, gnl|bosTau2|chr8 (33420394-33421090)
               

               
               1-691, gnl|Hg17|chr9 (98132544-98131823)
               

               
               1-691, gnl|Mm7|chr4 (46678721-46678067)
               


               
               770-1032, gnl|bosTau2|chr8 (33421109-33421355)
               

               
               770-1032, gnl|Hg17|chr9 (98131745-98131477)
               

               
               770-1032, gnl|Mm7|chr4 (46677989-46677727)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	309-691, + strand, RNAz p=0.994456
	887-1001, - strand, RNAz p=0.666972

	1-691, gnl\|bosTau2\|chr8 (33420394-33421090)
	1-691, gnl\|Hg17\|chr9 (98132544-98131823)
	1-691, gnl\|Mm7\|chr4 (46678721-46678067)

	770-1032, gnl\|bosTau2\|chr8 (33421109-33421355)
	770-1032, gnl\|Hg17\|chr9 (98131745-98131477)
	770-1032, gnl\|Mm7\|chr4 (46677989-46677727)