Non-Coding RNA Search

Ss1.1-Pig2-49M03.5

Sequence:


               
               CTTTCAGAATGGGAAGTTGACAGTCCGAGAAGCCTAGCCTCCTGTCACTGCCTATGTGGC
ACGTCGTTTCACAGTGATCCTTAAAGAGATGCTTTGTAGTATTTTGTAGGAAGGATGAAT
GTGTGCCCACGTGCAGGAGGAAGCAGATTGCTGGGAGAGCTTCACAAAAGCCCCGCTCCC
ACTGTGATATTTTTATATGTATTTTTGTGGGCCAATGTGTTAAAAAGAGAAGCATTGGCC
TTCTAATGCAATTTCGTCTTAAGGAATAAAAGCTGATAATAATCTTGCATCTTCAAGAAT
CCGATGACCGAGCTTTGGGGGAACGTACTTTCAGACAGACCAGGGCCTGGTCACTTCCCT
CCAATTAAACGATTTAACTGAGAGCCAAGGAGCTGCATATCTGTTAATCTGTCGCCTTTG
TCAGAAAAATATTTCCTAAGGATGCTGATGGCAGCTGACTGGTAAATCAGAAATAAGTCC
TAACAAATGCAATAGTAGAATAGGTGAAATTACGTACATCCTTTTATGACCTGCTGAGTG
GGGGGGATTAGCAAAACTCTTAAAATTTTAAATAGTCATTGCAAACTCTAAATTATGCAA
TATCTATTTCTATTTCATTCTCTTAACATATTATAATCTAAATCTTAAAAGCATTATGCT
CTGTAAACAATGCTCTCAGCCGGCTTTGCAGAAAAATGTATCTTCTATAGCTCAGAGTAA
GGAATTAAATTACCCTAGGAATCTTGGATCCCAACCACTTTGGGTCTGAAGAGGAATCCC
CAGCCCACTCAGAATACCTCACATGCATTTTGAGGTCACTTTCCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCAGAATGGGAAGTTGACAGTCCGAGAAGCCTAGCCTCCTGTCACTGCCTATGTGGC
ACGTCGTTTCACAGTGATCCTTAAAGAGATGCTTTGTAGTATTTTGTAGGAAGGATGAAT
GTGTGCCCACGTGCAGGAGGAAGCAGATTGCTGGGAGAGCTTCACAAAAGCCCCGCTCCC
ACTGTGATATTTTTATATGTATTTTTGTGGGCCAATGTGTTAAAAAGAGAAGCATTGGCC
TTCTAATGCAATTTCGTCTTAAGGAATAAAAGCTGATAATAATCTTGCATCTTCAAGAAT
CCGATGACCGAGCTTTGGGGGAACGTACTTTCAGACAGACCAGGGCCTGGTCACTTCCCT
CCAATTAAACGATTTAACTGAGAGCCAAGGAGCTGCATATCTGTTAATCTGTCGCCTTTG
TCAGAAAAATATTTCCTAAGGATGCTGATGGCAGCTGACTGGTAAATCAGAAATAAGTCC
TAACAAATGCAATAGTAGAATAGGTGAAATTACGTACATCCTTTTATGACCTGCTGAGTG
GGGGGGATTAGCAAAACTCTTAAAATTTTAAATAGTCATTGCAAACTCTAAATTATGCAA
TATCTATTTCTATTTCATTCTCTTAACATATTATAATCTAAATCTTAAAAGCATTATGCT
CTGTAAACAATGCTCTCAGCCGGCTTTGCAGAAAAATGTATCTTCTATAGCTCAGAGTAA
GGAATTAAATTACCCTAGGAATCTTGGATCCCAACCACTTTGGGTCTGAAGAGGAATCCC
CAGCCCACTCAGAATACCTCACATGCATTTTGAGGTCACTTTCCACAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               41-151, + strand, RNAz p=0.90109

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-151, + strand, RNAz p=0.90109

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-782, gnl|bosTau2|chr6 (56509810-56510576)
               

               
               41-782, gnl|Hg17|chr4 (87292475-87291691)
               

               
               41-782, gnl|Mm7|chr5 (102098473-102097759)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-782, gnl|bosTau2|chr6 (56509810-56510576)
               

               
               41-782, gnl|Hg17|chr4 (87292475-87291691)
               

               
               41-782, gnl|Mm7|chr5 (102098473-102097759)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	41-782, gnl\|bosTau2\|chr6 (56509810-56510576)
	41-782, gnl\|Hg17\|chr4 (87292475-87291691)
	41-782, gnl\|Mm7\|chr5 (102098473-102097759)