Ss1.1-Pig2-49P05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAAGAGCTCAGGACCATGCGGAAGCTGATGCAGGCGCAGGCAGTTGGAACGCAAAACA GACAACAACCCCCCATTTCCCTTATCTGCTCCCAGCGAACTGCTGTCTCACGCAAGAGAA ATAAAAAGAAAAAAGTGCCCCCAAAGCCTGTGGAACCTATCACTGTGAAACAGAAGCCCA GCATGTTAGAGGCAGAGAAGAAGACGGCGGGGGCCCCAGAGAATCCAGGGCTCCCCGCGG CTGAGCACACCTCCCCGGGGGAGAACCACATCCTCGGGTTCGGCATCGTGCTGGAGTCAC CGGCCTCCGATCCAGAAGTGCAACTTGCTGAAGGCTTCGATGTGTTCATGCCTAAATCTC AGCTGGACTCTATACTGTCAAACTACACTCGCTCAGGAAGCCTTCTGTTTAGAAAATTGG TGTGTGCATTTTTTGATGACAAGACTTTGGCTAACTCCTTACCCAATGGGAAGAGGAAAA GAGGACTCAATGACAACCGGAAAGGACTAGACCAAAATATTGTGGGTGCAATCAAAGTCT TCACAGAAAAATACTGCACTGCTAATCACGTGGATAAACTTCCTGGCCCAAGAGACTGGG TACAGATTCTGCAGGATCAAATCAAACTGGCCAGAAGAAGGTTAAAAAGAGGCTCAGCAG AGGTAGCTGACGGTGATGAAAGGCTGGACGGCGTTTCTCTACCCCCAACAGGTAAAACAC ATTTCCATTTTCAAACACTAAATGACTTTCTCAAGGTCTCACAGCTGGTTGGTGGCCAGG CCGGGGCCCAGGCCTCTCAACTCCCAGCCGTTCCACCGCGTAGCTTTCTTACACCTTCTC TGCATGTTTCCCAAAGATCCCAAGAGTTGCTGGATGTTCTTGCTCATCCCTTTAGGGTTC CATTTCAGTGTCTCCCCGTCGTCATGGATAGTCTGTCGTAAGTCGGCCCGAAGTTGCCTG CAGTGTCAGCCCACAGGCTCTCCCTCAGATCTGACCCACGGCTGTGAGGCCCTACCCAAA GCAGGAGGAGGCCGCCCCCGAAGGTCTTTTCACTGGACCCCTGATAGATATTTGATCCGA GTCACTAAACGGCATGATAAATAAAACCACTTAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAAGAGCTCAGGACCATGCGGAAGCTGATGCAGGCGCAGGCAGTTGGAACGCAAAACA GACAACAACCCCCCATTTCCCTTATCTGCTCCCAGCGAACTGCTGTCTCACGCAAGAGAA ATAAAAAGAAAAAAGTGCCCCCAAAGCCTGTGGAACCTATCACTGTGAAACAGAAGCCCA GCATGTTAGAGGCAGAGAAGAAGACGGCGGGGGCCCCAGAGAATCCAGGGCTCCCCGCGG CTGAGCACACCTCCCCGGGGGAGAACCACATCCTCGGGTTCGGCATCGTGCTGGAGTCAC CGGCCTCCGATCCAGAAGTGCAACTTGCTGAAGGCTTCGATGTGTTCATGCCTAAATCTC AGCTGGACTCTATACTGTCAAACTACACTCGCTCAGGAAGCCTTCTGTTTAGAAAATTGG TGTGTGCATTTTTTGATGACAAGACTTTGGCTAACTCCTTACCCAATGGGAAGAGGAAAA GAGGACTCAATGACAACCGGAAAGGACTAGACCAAAATATTGTGGGTGCAATCAAAGTCT TCACAGAAAAATACTGCACTGCTAATCACGTGGATAAACTTCCTGGCCCAAGAGACTGGG TACAGATTCTGCAGGATCAAATCAAACTGGCCAGAAGAAGGTTAAAAAGAGGCTCAGCAG AGGTAGCTGACGGTGATGAAAGGCTGGACGGCGTTTCTCTACCCCCAACAGGTAAAACAC ATTTCCATTTTCAAACACTAAATGACTTTCTCAAGGTCTCACAGCTGGTTGGTGGCCAGG CCGGGGCCCAGGCCTCTCAACTCCCAGCCGTTCCACCGCGTAGCTTTCTTACACCTTCTC TGCATGTTTCCCAAAGATCCCAAGAGTTGCTGGATGTTCTTGCTCATCCCTTTAGGGTTC CATTTCAGTGTCTCCCCGTCGTCATGGATAGTCTGTCGTAAGTCGGCCCGAAGTTGCCTG CAGTGTCAGCCCACAGGCTCTCCCTCAGATCTGACCCACGGCTGTGAGGCCCTACCCAAA GCAGGAGGAGGCCGCCCCCGAAGGTCTTTTCACTGGACCCCTGATAGATATTTGATCCGA GTCACTAAACGGCATGATAAATAAAACCACTTAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 82-198, - strand, RNAz p=0.713772 | |
| 733-872, - strand, RNAz p=0.951404 | |
| 983-1090, - strand, RNAz p=0.521884 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 82-198, - strand, RNAz p=0.713772 | |
| 733-872, - strand, RNAz p=0.951404 | |
| 983-1090, - strand, RNAz p=0.521884 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 43-311, gnl|bosTau2|chr13 (16482719-16482987) | |
| 43-311, gnl|canFam2|chr2 (25847846-25847523) | |
| 43-311, gnl|dasNov1|scaffold_8243 (14725-15025) | |
| 43-311, gnl|echTel1|scaffold_322477 (3394-3720) | |
| 43-311, gnl|galGal2|chr1 (3923578-3923291) | |
| 43-311, gnl|hg17|chr10 (13574584-13574907) | |
| 43-311, gnl|Hg17|chr10 (13574885-13574617) | |
| 43-311, gnl|loxAfr1|scaffold_2828 (44303-44628) | |
| 43-311, gnl|mm7|chr2 (4670296-4669969) | |
| 43-311, gnl|Mm7|chr2 (4669989-4670263) | |
| 43-311, gnl|monDom2|scaffold_30 (12714084-12714403) | |
| 43-311, gnl|oryCun1|scaffold_182497 (3535-3208) | |
| 43-311, gnl|panTro1|chr8 (14015377-14015700) | |
| 43-311, gnl|rheMac2|chrX (101321370-101321090) | |
| 43-311, gnl|rn3|chr17 (84653283-84653612) | |
| 43-311, gnl|xenTro1|scaffold_200 (489130-489424) | |
| 312-537, gnl|bosTau2|chr13 (16494183-16494408) | |
| 312-537, gnl|Hg17|chr10 (13563130-13562905) | |
| 312-537, gnl|Mm7|chr2 (4680350-4680575) | |
| 733-1113, gnl|bosTau2|chr13 (15243477-15243832) | |
| 733-1113, gnl|canFam2|chr2 (25891703-25891259) | |
| 733-1113, gnl|hg17|chr10 (13527125-13527573) | |
| 733-1113, gnl|Hg17|chr10 (13527545-13527139) | |
| 733-1113, gnl|loxAfr1|scaffold_35012 (15459-15944) | |
| 733-1113, gnl|mm7|chr2 (4715888-4715486) | |
| 733-1113, gnl|Mm7|chr2 (4715514-4715869) | |
| 733-1113, gnl|oryCun1|scaffold_214994 (69450-69905) | |
| 733-1113, gnl|panTro1|chr8 (13968928-13969376) | |
| 733-1113, gnl|rheMac2|chr9 (13708667-13709109) | |
| 733-1113, gnl|rn3|chr17 (84607058-84607457) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-311, gnl|bosTau2|chr13 (16482719-16482987) | |
| 43-311, gnl|canFam2|chr2 (25847846-25847523) | |
| 43-311, gnl|dasNov1|scaffold_8243 (14725-15025) | |
| 43-311, gnl|echTel1|scaffold_322477 (3394-3720) | |
| 43-311, gnl|galGal2|chr1 (3923578-3923291) | |
| 43-311, gnl|hg17|chr10 (13574584-13574907) | |
| 43-311, gnl|Hg17|chr10 (13574885-13574617) | |
| 43-311, gnl|loxAfr1|scaffold_2828 (44303-44628) | |
| 43-311, gnl|mm7|chr2 (4670296-4669969) | |
| 43-311, gnl|Mm7|chr2 (4669989-4670263) | |
| 43-311, gnl|monDom2|scaffold_30 (12714084-12714403) | |
| 43-311, gnl|oryCun1|scaffold_182497 (3535-3208) | |
| 43-311, gnl|panTro1|chr8 (14015377-14015700) | |
| 43-311, gnl|rheMac2|chrX (101321370-101321090) | |
| 43-311, gnl|rn3|chr17 (84653283-84653612) | |
| 43-311, gnl|xenTro1|scaffold_200 (489130-489424) | |
| 312-537, gnl|bosTau2|chr13 (16494183-16494408) | |
| 312-537, gnl|Hg17|chr10 (13563130-13562905) | |
| 312-537, gnl|Mm7|chr2 (4680350-4680575) | |
| 733-1113, gnl|bosTau2|chr13 (15243477-15243832) | |
| 733-1113, gnl|canFam2|chr2 (25891703-25891259) | |
| 733-1113, gnl|hg17|chr10 (13527125-13527573) | |
| 733-1113, gnl|Hg17|chr10 (13527545-13527139) | |
| 733-1113, gnl|loxAfr1|scaffold_35012 (15459-15944) | |
| 733-1113, gnl|mm7|chr2 (4715888-4715486) | |
| 733-1113, gnl|Mm7|chr2 (4715514-4715869) | |
| 733-1113, gnl|oryCun1|scaffold_214994 (69450-69905) | |
| 733-1113, gnl|panTro1|chr8 (13968928-13969376) | |
| 733-1113, gnl|rheMac2|chr9 (13708667-13709109) | |
| 733-1113, gnl|rn3|chr17 (84607058-84607457) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) |