Non-Coding RNA Search

Ss1.1-Pig2-4L04.5

Sequence:


               
               TTACCGTGAAGGCCCTGCAGCGGTTCCGCCTGGGCACGGACATGTCGCTCTTTGCCACCG
AACAGCTGGGTGCTGGGGCGGGCCAGGCCTACCCAGGCTACCCGGTGGGCAGCGGTGTGG
AGGGCACGGAGACCTACCAGAGCCCGCCCTTCACCGAGACCCTGGACACCAGCCCCAAAG
GGTACCAGGTGCCTGCCTACTAGCGGCTGGTGGGCCCAGACCAAGGTTCCAAGCCTGCCC
CACCAACGCAGGATCCAAGGCCTCCTGGGACCTCCCTCAGGTCCTCCTGGCCCAGCAGCA
GGGTGTGGCCGCTGTGGGCCGTCTGGGGCCGAGAGAAAATAGCCTCCAGAGTGCCTGGGC
TGTCCCCCCCAAGTTCCTTCGGTCCCTTTAGTCCCCCCCGCCCACGGTCAGAGGTCCTGA
GAGGAGACAGCACGGGCCTGGGTACATGTCCTCCAGTGGACCAGCCTAGGGGCCTTTCCC
CTGGAGAGAGAGCCAGCCACCTGTCCATTCTGGGGTCAGGGATCCAGCTGCCCCTCCATA
GCCAGGTGCAGGGGCTGCCCTGGACTGGGAGTGACTGGGAAGGGACAGCGCCCTCACCCC
GTGGCCTGGCAAGCATGGCCACACTTATCCCAAGTCCCTGTGGGTGGCGATGGTCCTGGT
GGCCATCCTGTAGGGCCATGTGCTCTGTCTGGAGCTGCCCTCCATTCCTCATGGGGCGAA
TAGAGTAGCCAGGCCCTGTCGCCATTGTGATTGTGGTCACGCCTTCGGGTTTCACCTCAT
AGTTCCCCACATGCAGCCCCTCTTTCTATGGCCCCTGCTCCAGCCCTTACCTGCCTCGGC
CCGGGCCCCTGCTGGGGTGTGGGTGGCTCTGGCCAGGGAAACACAGCGTGGCTATAGGCC
TGGGCAGCAGCCCATTAGTAAGACCTTGCCCAAAGGAGGTTCCAGACACCGGGGTGGCTG
GTACCACATACTCCTCATGAGCAGAGAGGCCTAGAGGCTCCTCCTGCCCACCCTGCCCTG
GAGTCGGCCATTCCCTGCCAACTGCATTACTTTGGCTTCCTGGACTAGTCCCTGAACTCC
CCACCCTGCACCTCATTTTGAGGCCCAGCCTGAGGCGGGGGTCCCTCTGCATAGCTGAGT
ACTCATGCATTGCTCGAAGCTGGCTTTTCTCATTAAGTCAATACCAAATGTGGTTGCCAC
ATCTCATTCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACCGTGAAGGCCCTGCAGCGGTTCCGCCTGGGCACGGACATGTCGCTCTTTGCCACCG
AACAGCTGGGTGCTGGGGCGGGCCAGGCCTACCCAGGCTACCCGGTGGGCAGCGGTGTGG
AGGGCACGGAGACCTACCAGAGCCCGCCCTTCACCGAGACCCTGGACACCAGCCCCAAAG
GGTACCAGGTGCCTGCCTACTAGCGGCTGGTGGGCCCAGACCAAGGTTCCAAGCCTGCCC
CACCAACGCAGGATCCAAGGCCTCCTGGGACCTCCCTCAGGTCCTCCTGGCCCAGCAGCA
GGGTGTGGCCGCTGTGGGCCGTCTGGGGCCGAGAGAAAATAGCCTCCAGAGTGCCTGGGC
TGTCCCCCCCAAGTTCCTTCGGTCCCTTTAGTCCCCCCCGCCCACGGTCAGAGGTCCTGA
GAGGAGACAGCACGGGCCTGGGTACATGTCCTCCAGTGGACCAGCCTAGGGGCCTTTCCC
CTGGAGAGAGAGCCAGCCACCTGTCCATTCTGGGGTCAGGGATCCAGCTGCCCCTCCATA
GCCAGGTGCAGGGGCTGCCCTGGACTGGGAGTGACTGGGAAGGGACAGCGCCCTCACCCC
GTGGCCTGGCAAGCATGGCCACACTTATCCCAAGTCCCTGTGGGTGGCGATGGTCCTGGT
GGCCATCCTGTAGGGCCATGTGCTCTGTCTGGAGCTGCCCTCCATTCCTCATGGGGCGAA
TAGAGTAGCCAGGCCCTGTCGCCATTGTGATTGTGGTCACGCCTTCGGGTTTCACCTCAT
AGTTCCCCACATGCAGCCCCTCTTTCTATGGCCCCTGCTCCAGCCCTTACCTGCCTCGGC
CCGGGCCCCTGCTGGGGTGTGGGTGGCTCTGGCCAGGGAAACACAGCGTGGCTATAGGCC
TGGGCAGCAGCCCATTAGTAAGACCTTGCCCAAAGGAGGTTCCAGACACCGGGGTGGCTG
GTACCACATACTCCTCATGAGCAGAGAGGCCTAGAGGCTCCTCCTGCCCACCCTGCCCTG
GAGTCGGCCATTCCCTGCCAACTGCATTACTTTGGCTTCCTGGACTAGTCCCTGAACTCC
CCACCCTGCACCTCATTTTGAGGCCCAGCCTGAGGCGGGGGTCCCTCTGCATAGCTGAGT
ACTCATGCATTGCTCGAAGCTGGCTTTTCTCATTAAGTCAATACCAAATGTGGTTGCCAC
ATCTCATTCTTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               160-279, - strand, RNAz p=0.92023
               

               
               756-980, - strand, RNAz p=0.643581

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.92023
               

               
               756-980, - strand, RNAz p=0.643581

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               171-298, - strand, RNAmicro p=0.986093
               

               
               958-1102, - strand, RNAmicro p=0.905711

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               171-298, - strand, RNAmicro p=0.986093
               

               
               958-1102, - strand, RNAmicro p=0.905711

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1212, gnl|bosTau2|chr25 (3053889-3052643)
               

               
               1-1212, gnl|Hg17|chr16 (1982872-1984065)
               

               
               1-1212, gnl|Mm7|chr17 (22868028-22866907)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1212, gnl|bosTau2|chr25 (3053889-3052643)
               

               
               1-1212, gnl|Hg17|chr16 (1982872-1984065)
               

               
               1-1212, gnl|Mm7|chr17 (22868028-22866907)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	160-279, - strand, RNAz p=0.92023
	756-980, - strand, RNAz p=0.643581

	171-298, - strand, RNAmicro p=0.986093
	958-1102, - strand, RNAmicro p=0.905711

	1-1212, gnl\|bosTau2\|chr25 (3053889-3052643)
	1-1212, gnl\|Hg17\|chr16 (1982872-1984065)
	1-1212, gnl\|Mm7\|chr17 (22868028-22866907)