Non-Coding RNA Search

Ss1.1-Pig2-4O10.5

Sequence:


               
               GCTCTGCTTCTATTCAGTTGGCTCTCTGCAGCTACCTTGTTCTCCTAACTCTCTGCCCTA
TTAGAGCACTATCTCTGGGAAACCGGGGCTTTAGCTCTGGGTTTGGGAGACATGACTGCC
ATTATGTGATCAAGAAAGGAGAACGGTGGCCCAGCCCCCACTGTGGCCACCCTGACCTCC
AGTGGTCACATCTCATGTACCAGAGACTGTGGGAGCTTAAGTGGTCCCTGACCACACACC
ATGCCGACAAGGATGCACACTTGCAAATGGATAACCTCCTGCTTCTGCGCTCTGGCCTCC
TACCACCCCATTTCCCCAGCCATAACCTGGGTGGAGCTGGAAGAATGTATTGCATGGTAG
AGGGGGTGACTTGGGAGTCGTCTCACTGCTCTCAGGGTTCAGTTAGATTTGTTGCTGGTT
TTGAAGCCCACCTGTTGTGGAGTGTTCTAATCAGTTTTGGCTTTCTGAGTTTTTGTGGAA
TTAAAGTGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTGCTTCTATTCAGTTGGCTCTCTGCAGCTACCTTGTTCTCCTAACTCTCTGCCCTA
TTAGAGCACTATCTCTGGGAAACCGGGGCTTTAGCTCTGGGTTTGGGAGACATGACTGCC
ATTATGTGATCAAGAAAGGAGAACGGTGGCCCAGCCCCCACTGTGGCCACCCTGACCTCC
AGTGGTCACATCTCATGTACCAGAGACTGTGGGAGCTTAAGTGGTCCCTGACCACACACC
ATGCCGACAAGGATGCACACTTGCAAATGGATAACCTCCTGCTTCTGCGCTCTGGCCTCC
TACCACCCCATTTCCCCAGCCATAACCTGGGTGGAGCTGGAAGAATGTATTGCATGGTAG
AGGGGGTGACTTGGGAGTCGTCTCACTGCTCTCAGGGTTCAGTTAGATTTGTTGCTGGTT
TTGAAGCCCACCTGTTGTGGAGTGTTCTAATCAGTTTTGGCTTTCTGAGTTTTTGTGGAA
TTAAAGTGCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               150-307, - strand, RNAz p=0.993306

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-307, - strand, RNAz p=0.993306

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               150-233, + strand, RNAmicro p=0.928132

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               150-233, + strand, RNAmicro p=0.928132

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-492, gnl|bosTau2|chr2 (77522936-77522447)
               

               
               1-492, gnl|canFam2|chr5 (35996734-35997122)
               

               
               1-492, gnl|dasNov1|scaffold_209404 (373-765)
               

               
               1-492, gnl|echTel1|scaffold_209345 (1321-1719)
               

               
               1-492, gnl|hg17|chr17 (8032349-8032740)
               

               
               1-492, gnl|Hg17|chr17 (8032895-8032397)
               

               
               1-492, gnl|loxAfr1|scaffold_28997 (16570-16182)
               

               
               1-492, gnl|mm7|chr11 (69143196-69142816)
               

               
               1-492, gnl|Mm7|chr11 (69142672-69143143)
               

               
               1-492, gnl|monDom2|scaffold_66 (5432322-5432746)
               

               
               1-492, gnl|panTro1|chr19_random (30420329-30419938)
               

               
               1-492, gnl|rheMac2|chr16 (7949972-7950364)
               

               
               1-492, gnl|rn3|chr10 (55829561-55829172)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr2 (77522936-77522447)
               

               
               1-492, gnl|canFam2|chr5 (35996734-35997122)
               

               
               1-492, gnl|dasNov1|scaffold_209404 (373-765)
               

               
               1-492, gnl|echTel1|scaffold_209345 (1321-1719)
               

               
               1-492, gnl|hg17|chr17 (8032349-8032740)
               

               
               1-492, gnl|Hg17|chr17 (8032895-8032397)
               

               
               1-492, gnl|loxAfr1|scaffold_28997 (16570-16182)
               

               
               1-492, gnl|mm7|chr11 (69143196-69142816)
               

               
               1-492, gnl|Mm7|chr11 (69142672-69143143)
               

               
               1-492, gnl|monDom2|scaffold_66 (5432322-5432746)
               

               
               1-492, gnl|panTro1|chr19_random (30420329-30419938)
               

               
               1-492, gnl|rheMac2|chr16 (7949972-7950364)
               

               
               1-492, gnl|rn3|chr10 (55829561-55829172)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               che (0.136314)

	1-492, gnl\|bosTau2\|chr2 (77522936-77522447)
	1-492, gnl\|canFam2\|chr5 (35996734-35997122)
	1-492, gnl\|dasNov1\|scaffold_209404 (373-765)
	1-492, gnl\|echTel1\|scaffold_209345 (1321-1719)
	1-492, gnl\|hg17\|chr17 (8032349-8032740)
	1-492, gnl\|Hg17\|chr17 (8032895-8032397)
	1-492, gnl\|loxAfr1\|scaffold_28997 (16570-16182)
	1-492, gnl\|mm7\|chr11 (69143196-69142816)
	1-492, gnl\|Mm7\|chr11 (69142672-69143143)
	1-492, gnl\|monDom2\|scaffold_66 (5432322-5432746)
	1-492, gnl\|panTro1\|chr19_random (30420329-30419938)
	1-492, gnl\|rheMac2\|chr16 (7949972-7950364)
	1-492, gnl\|rn3\|chr10 (55829561-55829172)