Non-Coding RNA Search

Ss1.1-Pig2-50B20.5

Sequence:


               
               GTGGCAATTCATGTCAGATGGTTCAGACATCGGTTTTGGGATTTTCCTGAAGACCAAGAT
TGGAGAACGGCAGCGGGCCGGGGAGATGACAGAGGTGCTGGCCAGCCAGAGGTACAATGC
CCACCTGGTCCTCAGGACGGGACCCTCACCTGCAGCAATCCTGGCATCTATGGGCTACGG
TTTGACAACACCTACAGCTTCATTCATGCAAAGAAGGTCAGTTTCACTGTGGAGGTCCTG
CTTCCAGACAAAGCCTCAGAAGAGAAGATGAAACAGCTGGGGGAAGCCACCCCAAAGTAA
TGCCTCCTCCCACAGCAGGCCTGGCTCCCTCAGTGTCTTCTTGTCAGTTTCTATCCCTTG
CAGCAGTCATTTTCCCAGCACTCTCATGCCCAAAGAGAAACTGGGCTAGAAAAAAAGACC
TCAGGGCTGGATCTGGGAAGCCTTCATTTCAGAATTAGGAAGAGGGAGAGTAGCTGGAGT
GGCTCTCTTTGCCTCTCAAATTACTAAGGAGTCCCCAAGGGCTGGGCATATGTGATAGCA
TATGTCTTGTTAGCTATGCCAATTTCACCTGTCCAGTGACAGCTGAGACAAGAAGCAGGG
GGCAGAACCATGGGGTGGCAGGGAAGAAATCAGGTAAAAGGGGAAAGATTGAGGCCTAAC
ACTTAGGGAAGCCAGCTGCAGGGTAAGAACTTGCCTCTGGAAGAACATGTAAGTCTAGAT
CATAGTGAGGAGTAGCAAGGTAGCCGGTTGCTAGTGTTATCTTGGGGGTCTGAGGCTCTT
CTGAACTTTGTATCACCAAGGCTGGGATCTTTTGGCTTTTCCCAGGTTTTAGGAGGTGGC
CTGAGTCAGCACAGATCTTCCCATTCAGGGACAGACAGGCAGGCCTCACCCTCACCTTGA
GGAAATCAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCAATTCATGTCAGATGGTTCAGACATCGGTTTTGGGATTTTCCTGAAGACCAAGAT
TGGAGAACGGCAGCGGGCCGGGGAGATGACAGAGGTGCTGGCCAGCCAGAGGTACAATGC
CCACCTGGTCCTCAGGACGGGACCCTCACCTGCAGCAATCCTGGCATCTATGGGCTACGG
TTTGACAACACCTACAGCTTCATTCATGCAAAGAAGGTCAGTTTCACTGTGGAGGTCCTG
CTTCCAGACAAAGCCTCAGAAGAGAAGATGAAACAGCTGGGGGAAGCCACCCCAAAGTAA
TGCCTCCTCCCACAGCAGGCCTGGCTCCCTCAGTGTCTTCTTGTCAGTTTCTATCCCTTG
CAGCAGTCATTTTCCCAGCACTCTCATGCCCAAAGAGAAACTGGGCTAGAAAAAAAGACC
TCAGGGCTGGATCTGGGAAGCCTTCATTTCAGAATTAGGAAGAGGGAGAGTAGCTGGAGT
GGCTCTCTTTGCCTCTCAAATTACTAAGGAGTCCCCAAGGGCTGGGCATATGTGATAGCA
TATGTCTTGTTAGCTATGCCAATTTCACCTGTCCAGTGACAGCTGAGACAAGAAGCAGGG
GGCAGAACCATGGGGTGGCAGGGAAGAAATCAGGTAAAAGGGGAAAGATTGAGGCCTAAC
ACTTAGGGAAGCCAGCTGCAGGGTAAGAACTTGCCTCTGGAAGAACATGTAAGTCTAGAT
CATAGTGAGGAGTAGCAAGGTAGCCGGTTGCTAGTGTTATCTTGGGGGTCTGAGGCTCTT
CTGAACTTTGTATCACCAAGGCTGGGATCTTTTGGCTTTTCCCAGGTTTTAGGAGGTGGC
CTGAGTCAGCACAGATCTTCCCATTCAGGGACAGACAGGCAGGCCTCACCCTCACCTTGA
GGAAATCAGCAA

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-172, gnl|bosTau2|chr17 (42630688-42630860)
               

               
               1-172, gnl|canFam2|chr26 (26586456-26586642)
               

               
               1-172, gnl|danRer3|chr5 (4010815-4011001)
               

               
               1-172, gnl|dasNov1|scaffold_87183 (5737-5551)
               

               
               1-172, gnl|echTel1|scaffold_159466 (1418-1604)
               

               
               1-172, gnl|fr1|chrUn (161609589-161609773)
               

               
               1-172, gnl|galGal2|chr15 (10690255-10690069)
               

               
               1-172, gnl|hg17|chr22 (29136769-29136955)
               

               
               1-172, gnl|Hg17|chr22 (29136777-29136949)
               

               
               1-172, gnl|loxAfr1|scaffold_5162 (21669-21481)
               

               
               1-172, gnl|mm7|chr11 (4055570-4055384)
               

               
               1-172, gnl|Mm7|chr11 (4055560-4055388)
               

               
               1-172, gnl|monDom2|scaffold_89 (4734497-4734693)
               

               
               1-172, gnl|oryCun1|scaffold_117668 (1432-1618)
               

               
               1-172, gnl|panTro1|chr23 (29232294-29232480)
               

               
               1-172, gnl|rheMac2|chr10 (74268505-74268691)
               

               
               1-172, gnl|rn3|chr14 (84754177-84753991)
               

               
               1-172, gnl|tetNig1|chr12 (3700577-3700393)
               

               
               1-172, gnl|xenTro1|scaffold_207 (985748-985934)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-172, gnl|bosTau2|chr17 (42630688-42630860)
               

               
               1-172, gnl|canFam2|chr26 (26586456-26586642)
               

               
               1-172, gnl|danRer3|chr5 (4010815-4011001)
               

               
               1-172, gnl|dasNov1|scaffold_87183 (5737-5551)
               

               
               1-172, gnl|echTel1|scaffold_159466 (1418-1604)
               

               
               1-172, gnl|fr1|chrUn (161609589-161609773)
               

               
               1-172, gnl|galGal2|chr15 (10690255-10690069)
               

               
               1-172, gnl|hg17|chr22 (29136769-29136955)
               

               
               1-172, gnl|Hg17|chr22 (29136777-29136949)
               

               
               1-172, gnl|loxAfr1|scaffold_5162 (21669-21481)
               

               
               1-172, gnl|mm7|chr11 (4055570-4055384)
               

               
               1-172, gnl|Mm7|chr11 (4055560-4055388)
               

               
               1-172, gnl|monDom2|scaffold_89 (4734497-4734693)
               

               
               1-172, gnl|oryCun1|scaffold_117668 (1432-1618)
               

               
               1-172, gnl|panTro1|chr23 (29232294-29232480)
               

               
               1-172, gnl|rheMac2|chr10 (74268505-74268691)
               

               
               1-172, gnl|rn3|chr14 (84754177-84753991)
               

               
               1-172, gnl|tetNig1|chr12 (3700577-3700393)
               

               
               1-172, gnl|xenTro1|scaffold_207 (985748-985934)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cli (0.152812)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)

	1-172, gnl\|bosTau2\|chr17 (42630688-42630860)
	1-172, gnl\|canFam2\|chr26 (26586456-26586642)
	1-172, gnl\|danRer3\|chr5 (4010815-4011001)
	1-172, gnl\|dasNov1\|scaffold_87183 (5737-5551)
	1-172, gnl\|echTel1\|scaffold_159466 (1418-1604)
	1-172, gnl\|fr1\|chrUn (161609589-161609773)
	1-172, gnl\|galGal2\|chr15 (10690255-10690069)
	1-172, gnl\|hg17\|chr22 (29136769-29136955)
	1-172, gnl\|Hg17\|chr22 (29136777-29136949)
	1-172, gnl\|loxAfr1\|scaffold_5162 (21669-21481)
	1-172, gnl\|mm7\|chr11 (4055570-4055384)
	1-172, gnl\|Mm7\|chr11 (4055560-4055388)
	1-172, gnl\|monDom2\|scaffold_89 (4734497-4734693)
	1-172, gnl\|oryCun1\|scaffold_117668 (1432-1618)
	1-172, gnl\|panTro1\|chr23 (29232294-29232480)
	1-172, gnl\|rheMac2\|chr10 (74268505-74268691)
	1-172, gnl\|rn3\|chr14 (84754177-84753991)
	1-172, gnl\|tetNig1\|chr12 (3700577-3700393)
	1-172, gnl\|xenTro1\|scaffold_207 (985748-985934)