Ss1.1-Pig2-50E01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTGGTTCCACGGGATGCTCTCTCGACTCAAGGCCGCACAGCTAGTGTTGGCTGGAGGC ACCGGCTCCCACGGTGTTTTCCTGGTACGTCAGAGCGAGACGAGGCGGGGCGAATATGTC CTCACTTTCAACTTCCAGGGCAAGGCCAAGCACCTGCGTCTGTCGCTGAACGAGGAAGGT CAGTGTCGGGTCCAGCACCTGTGGTTCCAGTCCATTTTCGATATGCTCGAGCATTTCCGG ATGCACCCCATCCCTCTGGAGTCTGGAGGCTCCAGTGACGTTGTCCTTGTCAGCTATGTC GTGTCCTCCCAGCGACAGCAGGGCCGGGAGCAGGCTGGGAGCCATGCAGGGGTGTGCGAG GGAGATCGATGCTACCCCGATGCCTCCTCCACCCTCATGCCCTTCGGAGCGAGTGACTGT GTAACCGAGCACCTCCCATGACCCACCCCAGCCCCCTGAACCCCCTTCGTGGACAGATCC CTCACATCCTGGGGCAGAAGAGGCGTCGGGGGCGCCAGAAGTGGCGGCAGCAGCAGCCAC CGCAGCCAAAGAGAGGCAAGAGAAAGAGAAAGCGGGCAGTGGAGGGGTCCAGGAAGAGCT GGTCCCCGTGGTTGAGCTGGTCCCCGTGGTTGAATTGGAAGAGGCCATAGCATCAGGCGC GGAGGCCCAGGGAGGCGCTGAATCTGGTGGGGCCCCGGGGGGGACCCTGATGGTGCAGCT CCAGCAGTTACCACTAGGGGGCGATGGAGAAGAAGGGGGCCATCCCAGAGCCATAAATAA CCAGTACTCCTTCGTGTGAGACACCCTCCCCCACCCTTTCTGCACTCTTCTTGCTCCCCA GCCCTCAGTTCCTGAGACTGGAGCTGTGCAGGGCCATAGAGGAGCCGTAGGCATCCCCTC CCCACATGCTTCCTGACCCTTGACGGCCAAGGGCAAATATGTTGGTACAAAAAGGTTCAA GAGCCCTGATAACTCCCCGGTTCATACACTACAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTGGTTCCACGGGATGCTCTCTCGACTCAAGGCCGCACAGCTAGTGTTGGCTGGAGGC ACCGGCTCCCACGGTGTTTTCCTGGTACGTCAGAGCGAGACGAGGCGGGGCGAATATGTC CTCACTTTCAACTTCCAGGGCAAGGCCAAGCACCTGCGTCTGTCGCTGAACGAGGAAGGT CAGTGTCGGGTCCAGCACCTGTGGTTCCAGTCCATTTTCGATATGCTCGAGCATTTCCGG ATGCACCCCATCCCTCTGGAGTCTGGAGGCTCCAGTGACGTTGTCCTTGTCAGCTATGTC GTGTCCTCCCAGCGACAGCAGGGCCGGGAGCAGGCTGGGAGCCATGCAGGGGTGTGCGAG GGAGATCGATGCTACCCCGATGCCTCCTCCACCCTCATGCCCTTCGGAGCGAGTGACTGT GTAACCGAGCACCTCCCATGACCCACCCCAGCCCCCTGAACCCCCTTCGTGGACAGATCC CTCACATCCTGGGGCAGAAGAGGCGTCGGGGGCGCCAGAAGTGGCGGCAGCAGCAGCCAC CGCAGCCAAAGAGAGGCAAGAGAAAGAGAAAGCGGGCAGTGGAGGGGTCCAGGAAGAGCT GGTCCCCGTGGTTGAGCTGGTCCCCGTGGTTGAATTGGAAGAGGCCATAGCATCAGGCGC GGAGGCCCAGGGAGGCGCTGAATCTGGTGGGGCCCCGGGGGGGACCCTGATGGTGCAGCT CCAGCAGTTACCACTAGGGGGCGATGGAGAAGAAGGGGGCCATCCCAGAGCCATAAATAA CCAGTACTCCTTCGTGTGAGACACCCTCCCCCACCCTTTCTGCACTCTTCTTGCTCCCCA GCCCTCAGTTCCTGAGACTGGAGCTGTGCAGGGCCATAGAGGAGCCGTAGGCATCCCCTC CCCACATGCTTCCTGACCCTTGACGGCCAAGGGCAAATATGTTGGTACAAAAAGGTTCAA GAGCCCTGATAACTCCCCGGTTCATACACTACAGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 584-783, - strand, RNAz p=0.92466 | |
| 824-943, - strand, RNAz p=0.999562 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 584-783, - strand, RNAz p=0.92466 | |
| 824-943, - strand, RNAz p=0.999562 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-150, gnl|bosTau2|chr17 (29392994-29392845) | |
| 1-150, gnl|canFam2|chr26 (12086844-12087025) | |
| 1-150, gnl|danRer3|chrUn (128853847-128853669) | |
| 1-150, gnl|dasNov1|scaffold_10484 (5607-5788) | |
| 1-150, gnl|echTel1|scaffold_321244 (31062-30881) | |
| 1-150, gnl|fr1|chrUn (46395237-46395059) | |
| 1-150, gnl|galGal2|chr15 (6068249-6068427) | |
| 1-150, gnl|hg17|chr12 (110347894-110348075) | |
| 1-150, gnl|Hg17|chr12 (110347919-110348068) | |
| 1-150, gnl|loxAfr1|scaffold_15988 (17414-17234) | |
| 1-150, gnl|mm7|chr5 (121052903-121052722) | |
| 1-150, gnl|Mm7|chr5 (121052876-121052727) | |
| 1-150, gnl|monDom2|scaffold_203 (597321-597140) | |
| 1-150, gnl|oryCun1|scaffold_206816 (89528-89347) | |
| 1-150, gnl|panTro1|chr10 (112953766-112953947) | |
| 1-150, gnl|rheMac2|chr11 (112388311-112388492) | |
| 1-150, gnl|rn3|chr12 (35818635-35818816) | |
| 1-150, gnl|tetNig1|chrUn_random (119352008-119352187) | |
| 1-150, gnl|xenTro1|scaffold_501 (22370-22551) | |
| 349-996, gnl|bosTau2|chr25 (24900784-24900141) | |
| 349-996, gnl|Hg17|chr16 (28792191-28792819) | |
| 349-996, gnl|Mm7|chr7 (122564407-122563765) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-150, gnl|bosTau2|chr17 (29392994-29392845) | |
| 1-150, gnl|canFam2|chr26 (12086844-12087025) | |
| 1-150, gnl|danRer3|chrUn (128853847-128853669) | |
| 1-150, gnl|dasNov1|scaffold_10484 (5607-5788) | |
| 1-150, gnl|echTel1|scaffold_321244 (31062-30881) | |
| 1-150, gnl|fr1|chrUn (46395237-46395059) | |
| 1-150, gnl|galGal2|chr15 (6068249-6068427) | |
| 1-150, gnl|hg17|chr12 (110347894-110348075) | |
| 1-150, gnl|Hg17|chr12 (110347919-110348068) | |
| 1-150, gnl|loxAfr1|scaffold_15988 (17414-17234) | |
| 1-150, gnl|mm7|chr5 (121052903-121052722) | |
| 1-150, gnl|Mm7|chr5 (121052876-121052727) | |
| 1-150, gnl|monDom2|scaffold_203 (597321-597140) | |
| 1-150, gnl|oryCun1|scaffold_206816 (89528-89347) | |
| 1-150, gnl|panTro1|chr10 (112953766-112953947) | |
| 1-150, gnl|rheMac2|chr11 (112388311-112388492) | |
| 1-150, gnl|rn3|chr12 (35818635-35818816) | |
| 1-150, gnl|tetNig1|chrUn_random (119352008-119352187) | |
| 1-150, gnl|xenTro1|scaffold_501 (22370-22551) | |
| 349-996, gnl|bosTau2|chr25 (24900784-24900141) | |
| 349-996, gnl|Hg17|chr16 (28792191-28792819) | |
| 349-996, gnl|Mm7|chr7 (122564407-122563765) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| pla (0.133672) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| pla (0.133672) | |
| cty (0.10408) | |
| jej (0.0989218) |