Non-Coding RNA Search

Ss1.1-Pig2-50I07.5

Sequence:


               
               GGACAGCATCACTGCAGGCTCATGGTGCCCCGCGAGGAAGGAGAAGAGTAAGCAGATCCT
CGTGTTGGGCCTGGATGGAGCAGGCAAGACCAGTGTTCTCCACTCTCTAGCCTTAAACAG
AGTCCAGCACAGCGTGGCACCCACCCGAGGTCTCAATGCAGTGTGCATCCACACTGAAGA
CAGCCAGATGGAATTCCTGGAGATTGGCGGCAGCGAACCATACCGTTCCTACTGGGAGAA
GTACCTGTCCAGGGGACTGCTGCTCATCTTCGTGGTGGACTCGGCAGACCATGGCAGGTT
ACCTGAAGCCAAGAAACACCTTCATCGACTAATTGGAACCAACCCAGTCCTTCCTCTGGT
TGTGTTTGCAAACAAGCAGGATCTGGAATCAGCCTACCCCATTGCAGACATCCATGAGGC
TTTGGCATTGTCTGAGGTGGGCAACGATAGGAAGATGTTCCTGTTTGGAACCCAGGTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAGCATCACTGCAGGCTCATGGTGCCCCGCGAGGAAGGAGAAGAGTAAGCAGATCCT
CGTGTTGGGCCTGGATGGAGCAGGCAAGACCAGTGTTCTCCACTCTCTAGCCTTAAACAG
AGTCCAGCACAGCGTGGCACCCACCCGAGGTCTCAATGCAGTGTGCATCCACACTGAAGA
CAGCCAGATGGAATTCCTGGAGATTGGCGGCAGCGAACCATACCGTTCCTACTGGGAGAA
GTACCTGTCCAGGGGACTGCTGCTCATCTTCGTGGTGGACTCGGCAGACCATGGCAGGTT
ACCTGAAGCCAAGAAACACCTTCATCGACTAATTGGAACCAACCCAGTCCTTCCTCTGGT
TGTGTTTGCAAACAAGCAGGATCTGGAATCAGCCTACCCCATTGCAGACATCCATGAGGC
TTTGGCATTGTCTGAGGTGGGCAACGATAGGAAGATGTTCCTGTTTGGAACCCAGGTAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41581483|gb|AAS07576.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41581483|gb|AAS07576.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-157, - strand, RNAz p=0.922154

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-157, - strand, RNAz p=0.922154

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               39-203, gnl|bosTau2|chr6 (35280417-35280253)
               

               
               39-203, gnl|Hg17|chr4 (57218277-57218441)
               

               
               39-203, gnl|Mm7|chr5 (76938013-76938177)
               


               
               204-380, gnl|bosTau2|chr6 (35277223-35277047)
               

               
               204-380, gnl|canFam2|chr13 (51657405-51657586)
               

               
               204-380, gnl|danRer3|chr21 (18960309-18960487)
               

               
               204-380, gnl|dasNov1|scaffold_3711 (12265-12084)
               

               
               204-380, gnl|fr1|chrUn (27712402-27712221)
               

               
               204-380, gnl|hg17|chr4 (57225771-57225952)
               

               
               204-380, gnl|Hg17|chr4 (57225772-57225948)
               

               
               204-380, gnl|loxAfr1|scaffold_6960 (51935-52116)
               

               
               204-380, gnl|mm7|chr5 (76938774-76938955)
               

               
               204-380, gnl|Mm7|chr5 (76938775-76938951)
               

               
               204-380, gnl|monDom2|scaffold_26 (20377288-20377469)
               

               
               204-380, gnl|oryCun1|scaffold_99008 (1009-1179)
               

               
               204-380, gnl|panTro1|chr3 (89404786-89404605)
               

               
               204-380, gnl|rheMac2|chr5 (72859957-72859776)
               

               
               204-380, gnl|rn3|chr14 (33456064-33455883)
               

               
               204-380, gnl|tetNig1|chr20 (2786728-2786909)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-203, gnl|bosTau2|chr6 (35280417-35280253)
               

               
               39-203, gnl|Hg17|chr4 (57218277-57218441)
               

               
               39-203, gnl|Mm7|chr5 (76938013-76938177)
               


               
               204-380, gnl|bosTau2|chr6 (35277223-35277047)
               

               
               204-380, gnl|canFam2|chr13 (51657405-51657586)
               

               
               204-380, gnl|danRer3|chr21 (18960309-18960487)
               

               
               204-380, gnl|dasNov1|scaffold_3711 (12265-12084)
               

               
               204-380, gnl|fr1|chrUn (27712402-27712221)
               

               
               204-380, gnl|hg17|chr4 (57225771-57225952)
               

               
               204-380, gnl|Hg17|chr4 (57225772-57225948)
               

               
               204-380, gnl|loxAfr1|scaffold_6960 (51935-52116)
               

               
               204-380, gnl|mm7|chr5 (76938774-76938955)
               

               
               204-380, gnl|Mm7|chr5 (76938775-76938951)
               

               
               204-380, gnl|monDom2|scaffold_26 (20377288-20377469)
               

               
               204-380, gnl|oryCun1|scaffold_99008 (1009-1179)
               

               
               204-380, gnl|panTro1|chr3 (89404786-89404605)
               

               
               204-380, gnl|rheMac2|chr5 (72859957-72859776)
               

               
               204-380, gnl|rn3|chr14 (33456064-33455883)
               

               
               204-380, gnl|tetNig1|chr20 (2786728-2786909)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	39-203, gnl\|bosTau2\|chr6 (35280417-35280253)
	39-203, gnl\|Hg17\|chr4 (57218277-57218441)
	39-203, gnl\|Mm7\|chr5 (76938013-76938177)

	204-380, gnl\|bosTau2\|chr6 (35277223-35277047)
	204-380, gnl\|canFam2\|chr13 (51657405-51657586)
	204-380, gnl\|danRer3\|chr21 (18960309-18960487)
	204-380, gnl\|dasNov1\|scaffold_3711 (12265-12084)
	204-380, gnl\|fr1\|chrUn (27712402-27712221)
	204-380, gnl\|hg17\|chr4 (57225771-57225952)
	204-380, gnl\|Hg17\|chr4 (57225772-57225948)
	204-380, gnl\|loxAfr1\|scaffold_6960 (51935-52116)
	204-380, gnl\|mm7\|chr5 (76938774-76938955)
	204-380, gnl\|Mm7\|chr5 (76938775-76938951)
	204-380, gnl\|monDom2\|scaffold_26 (20377288-20377469)
	204-380, gnl\|oryCun1\|scaffold_99008 (1009-1179)
	204-380, gnl\|panTro1\|chr3 (89404786-89404605)
	204-380, gnl\|rheMac2\|chr5 (72859957-72859776)
	204-380, gnl\|rn3\|chr14 (33456064-33455883)
	204-380, gnl\|tetNig1\|chr20 (2786728-2786909)