Non-Coding RNA Search

Ss1.1-Pig2-50M09.5

Sequence:


               
               GTATGTGAGGAAGCAGATACAGTACCTGGACTCTATGAATGGTGAGGATCTGCTTCTGAC
AGGGGAGGTGAGCTGGCGCCCTCTAGTGGAGAAAAATCCTCAGAGCGTCCTGAAGCCCCA
TTCCCCAACTTATAACGACGAGGGTCTTTGATGCGGGGTCCTGCTGAAAAGCTGGCCAGC
TAGCTTTGAGGAACTGCCAGAAGAGAGGTGCCTGTTTGGCGCAGGATCCTGCAGAAAGTG
GCCTGAACTGACCTTTGAACAGCATCTGTCAAATACCTGGCCCCATTTGTGTTGATTTTC
CTCTTAGTATGCCAGGGAGTCTGATCTAGCAGGATACAGTGCTGGGAGAACCCTGAGCTG
TACTGGAGTGTCCGCTCCCTCAACAGAAGCCCTGAGCAAGAGCTGCCCAGCACATACTCC
CCAAGTCCCCTCCAGGACTATGTGATTGACTGTTTTCCCCAAAAGCCACAGAAGGGAATG
AGGGTAGGTTGGAAAGGGGGGACCCCCACCCCACCCCCAAGGGCCCACTGTGGCCTGAGA
GCAGTTCGTAACACTGCTGAATCAAGACGGGTAACCCTCTCTGTCCTCTGGCTTTGAACC
ATTGGGTTGAGTTGGCCATTAAAAGAAACAGAGACTTATCTCTGCTATAGCTCTTTATTC
CCTGGTCTTTTAGAAACCTCCCTGCGATGGTGGATGCCTTGAGCTGAGGCGCACCGCCTA
GCTCACTTAGAGACAGGGAGAGGGTGAGGGCCAGGTGGGTCTCTGCTGCTAATTTGCCTC
CATTTCATGGAGATGTCGCCGTTCTGGCCAAGGCACAGCCTGCTGTTGAACGGGGTGAGG
CCCATGCCATCTTTCCTCTCTTGGCTCCCCCTTATATACTATAGTGGGGAGAAGAGGAGA
ACATTCTTCCTGACTTAGTGGTATGATCCCAGGACCCAGCCCCATGCCCAGCCTTCTACC
CCCTTCCCAGCTCCTGGAGCAGGTGCTGCAAGAGCCATCCTGGTCTGAGCTCTTGGGGAC
CAGTCCCCTCCTCCCTGTGAGTACGGGTCATCTCTTGGGGGATTTTCTTTAAATTGAAGA
AGGGGGCAGAGGACCATTTTGCCCTTCCTCCCCCCACATCAAACTTCCTTCATTTAACTT
GCAATAAAATGAGTCATATAAAGAAACTCTATATGGGTGAGGTATATCCCACTTCTGTGA
AAACATTACAAAACCAAACCGCCTTCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATGTGAGGAAGCAGATACAGTACCTGGACTCTATGAATGGTGAGGATCTGCTTCTGAC
AGGGGAGGTGAGCTGGCGCCCTCTAGTGGAGAAAAATCCTCAGAGCGTCCTGAAGCCCCA
TTCCCCAACTTATAACGACGAGGGTCTTTGATGCGGGGTCCTGCTGAAAAGCTGGCCAGC
TAGCTTTGAGGAACTGCCAGAAGAGAGGTGCCTGTTTGGCGCAGGATCCTGCAGAAAGTG
GCCTGAACTGACCTTTGAACAGCATCTGTCAAATACCTGGCCCCATTTGTGTTGATTTTC
CTCTTAGTATGCCAGGGAGTCTGATCTAGCAGGATACAGTGCTGGGAGAACCCTGAGCTG
TACTGGAGTGTCCGCTCCCTCAACAGAAGCCCTGAGCAAGAGCTGCCCAGCACATACTCC
CCAAGTCCCCTCCAGGACTATGTGATTGACTGTTTTCCCCAAAAGCCACAGAAGGGAATG
AGGGTAGGTTGGAAAGGGGGGACCCCCACCCCACCCCCAAGGGCCCACTGTGGCCTGAGA
GCAGTTCGTAACACTGCTGAATCAAGACGGGTAACCCTCTCTGTCCTCTGGCTTTGAACC
ATTGGGTTGAGTTGGCCATTAAAAGAAACAGAGACTTATCTCTGCTATAGCTCTTTATTC
CCTGGTCTTTTAGAAACCTCCCTGCGATGGTGGATGCCTTGAGCTGAGGCGCACCGCCTA
GCTCACTTAGAGACAGGGAGAGGGTGAGGGCCAGGTGGGTCTCTGCTGCTAATTTGCCTC
CATTTCATGGAGATGTCGCCGTTCTGGCCAAGGCACAGCCTGCTGTTGAACGGGGTGAGG
CCCATGCCATCTTTCCTCTCTTGGCTCCCCCTTATATACTATAGTGGGGAGAAGAGGAGA
ACATTCTTCCTGACTTAGTGGTATGATCCCAGGACCCAGCCCCATGCCCAGCCTTCTACC
CCCTTCCCAGCTCCTGGAGCAGGTGCTGCAAGAGCCATCCTGGTCTGAGCTCTTGGGGAC
CAGTCCCCTCCTCCCTGTGAGTACGGGTCATCTCTTGGGGGATTTTCTTTAAATTGAAGA
AGGGGGCAGAGGACCATTTTGCCCTTCCTCCCCCCACATCAAACTTCCTTCATTTAACTT
GCAATAAAATGAGTCATATAAAGAAACTCTATATGGGTGAGGTATATCCCACTTCTGTGA
AAACATTACAAAACCAAACCGCCTTCAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               371-487, - strand, RNAz p=0.913167
               

               
               1021-1226, - strand, RNAz p=0.996737

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-487, - strand, RNAz p=0.913167
               

               
               1021-1226, - strand, RNAz p=0.996737

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               329-422, - strand, RNAmicro p=0.999027

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               329-422, - strand, RNAmicro p=0.999027

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-805, gnl|bosTau2|chr13 (45160879-45161657)
               

               
               13-805, gnl|Hg17|chr20 (33355290-33354501)
               

               
               13-805, gnl|Mm7|chr2 (155589388-155588447)
               


               
               827-1226, gnl|bosTau2|chr13 (45161763-45162156)
               

               
               827-1226, gnl|Hg17|chr20 (33354386-33354006)
               

               
               827-1226, gnl|Mm7|chr2 (155588332-155587961)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-805, gnl|bosTau2|chr13 (45160879-45161657)
               

               
               13-805, gnl|Hg17|chr20 (33355290-33354501)
               

               
               13-805, gnl|Mm7|chr2 (155589388-155588447)
               


               
               827-1226, gnl|bosTau2|chr13 (45161763-45162156)
               

               
               827-1226, gnl|Hg17|chr20 (33354386-33354006)
               

               
               827-1226, gnl|Mm7|chr2 (155588332-155587961)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cst (0.280073)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               cli (0.152812)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               cli (0.152812)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	371-487, - strand, RNAz p=0.913167
	1021-1226, - strand, RNAz p=0.996737

	13-805, gnl\|bosTau2\|chr13 (45160879-45161657)
	13-805, gnl\|Hg17\|chr20 (33355290-33354501)
	13-805, gnl\|Mm7\|chr2 (155589388-155588447)

	827-1226, gnl\|bosTau2\|chr13 (45161763-45162156)
	827-1226, gnl\|Hg17\|chr20 (33354386-33354006)
	827-1226, gnl\|Mm7\|chr2 (155588332-155587961)

	cst (0.280073)
	hea (0.204499)
	col (0.195008)
	cli (0.152812)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	cov (0.132153)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)