Non-Coding RNA Search

Ss1.1-Pig2-51B23.5

Sequence:


               
               TTCACCGTGTCCTGGGACAAGATGGACATCTCTTTCCTACTCATCACAGCAGAGCCAAAC
CTGTAATACTGGTGGCAGGAGGATGGGGAAAGGGGAGGGGAGCTGGCATAGACGTGAGTG
GGGAGTATTTCAGTTATTTACCTATGTAGGCAGGTGCTTCTCTTGGACTCCGGATCACTG
GGGCTGAAGGCTTTTGCAGTTAGGCTTTTGAGGGGTGAAGGAAATTGGCAGAGGTTGGAA
TAAATTATCTAAAGGGAAGAGTTCCATGAGGGCCAAGGGAGACACTCCCCCCACCCTCGA
AAAAGGTACAGGGATAACTTACCTCCTCCAACAAGGAGCGGCTGTGATTTATTGCCGCAA
AGTACTCAGTGTCTATTTGATATTCATTGTTGAATTTTAGTTACGAGAGGGAAGACGAAT
TTTACTTTGGTTGTTATTTTCCTGGATGTTCGCTTTCTCAAAGCTGCAGGACAAAACGTT
ACAGAACGGACAAAGCCACTCTCTCTGTGATTTCTCTGCTTTTTGTTCATATTCTTTTTA
TTTACCCAGGCTTTCCTGCTCTCCTGCTTCCCCCACCCCATCCACTCCTTCCTTTCTTTG
TAAGCGGTCATATGTGAGAGTTTGTTGGAGAAATCCAGTGAGGCTGAAGTCAGGGGGCGA
GAAAGGGCAGTTAACTAAACAGCACTTTATTTCTTTGAGGTTCTTTGTAGGACATGGGGG
TGTGAGGGGTGTGAACACCCCCATTGTGTTGGAGGGCAGTTGGTGGGGTTGAATGTTTCC
CGTTGGGAAAGGAAAATTGCTCTTCAAGGGTGGAGACATGCCTTTGCCCAGGGTTCCTCT
CTTAGGCGTGTCTCCCTTATTTCTCCCCATCGAGGTGCCTCCCACACACAGCGTCCCATC
TGTTCTCCCTAAGATTCCTTCATTACCAATCATCACTCTTTTCTAAACCCCTTTTCTACT
CAGATCCGGACAGGATTTTCAAGGGTAGGCTCACTCAGACATGTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACCGTGTCCTGGGACAAGATGGACATCTCTTTCCTACTCATCACAGCAGAGCCAAAC
CTGTAATACTGGTGGCAGGAGGATGGGGAAAGGGGAGGGGAGCTGGCATAGACGTGAGTG
GGGAGTATTTCAGTTATTTACCTATGTAGGCAGGTGCTTCTCTTGGACTCCGGATCACTG
GGGCTGAAGGCTTTTGCAGTTAGGCTTTTGAGGGGTGAAGGAAATTGGCAGAGGTTGGAA
TAAATTATCTAAAGGGAAGAGTTCCATGAGGGCCAAGGGAGACACTCCCCCCACCCTCGA
AAAAGGTACAGGGATAACTTACCTCCTCCAACAAGGAGCGGCTGTGATTTATTGCCGCAA
AGTACTCAGTGTCTATTTGATATTCATTGTTGAATTTTAGTTACGAGAGGGAAGACGAAT
TTTACTTTGGTTGTTATTTTCCTGGATGTTCGCTTTCTCAAAGCTGCAGGACAAAACGTT
ACAGAACGGACAAAGCCACTCTCTCTGTGATTTCTCTGCTTTTTGTTCATATTCTTTTTA
TTTACCCAGGCTTTCCTGCTCTCCTGCTTCCCCCACCCCATCCACTCCTTCCTTTCTTTG
TAAGCGGTCATATGTGAGAGTTTGTTGGAGAAATCCAGTGAGGCTGAAGTCAGGGGGCGA
GAAAGGGCAGTTAACTAAACAGCACTTTATTTCTTTGAGGTTCTTTGTAGGACATGGGGG
TGTGAGGGGTGTGAACACCCCCATTGTGTTGGAGGGCAGTTGGTGGGGTTGAATGTTTCC
CGTTGGGAAAGGAAAATTGCTCTTCAAGGGTGGAGACATGCCTTTGCCCAGGGTTCCTCT
CTTAGGCGTGTCTCCCTTATTTCTCCCCATCGAGGTGCCTCCCACACACAGCGTCCCATC
TGTTCTCCCTAAGATTCCTTCATTACCAATCATCACTCTTTTCTAAACCCCTTTTCTACT
CAGATCCGGACAGGATTTTCAAGGGTAGGCTCACTCAGACATGTAAAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               237-348, - strand, RNAz p=0.64596
               

               
               726-866, + strand, RNAz p=0.777812

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-348, - strand, RNAz p=0.64596
               

               
               726-866, + strand, RNAz p=0.777812

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_018416, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018416, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1008, gnl|bosTau2|chr1 (31861165-31860158)
               

               
               2-1008, gnl|Hg17|chr12 (8097800-8098810)
               

               
               2-1008, gnl|Mm7|chr6 (122880833-122881793)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1008, gnl|bosTau2|chr1 (31861165-31860158)
               

               
               2-1008, gnl|Hg17|chr12 (8097800-8098810)
               

               
               2-1008, gnl|Mm7|chr6 (122880833-122881793)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	237-348, - strand, RNAz p=0.64596
	726-866, + strand, RNAz p=0.777812

	2-1008, gnl\|bosTau2\|chr1 (31861165-31860158)
	2-1008, gnl\|Hg17\|chr12 (8097800-8098810)
	2-1008, gnl\|Mm7\|chr6 (122880833-122881793)