Non-Coding RNA Search

Ss1.1-Pig2-51F01.5

Sequence:


               
               CGGATGCCTGCCTGCCTGCCTACTCAAAGGCTCTCTGTGCCCCAAAGCCTTGATTCACGG
CCTGAGCAATTTCTGTTGTTCATGCACAGAGCTTGGCAACCCATGCCCTCTGGGACAGAT
GCCATCCTTAGAAACTCCAGTCGTATGAAGGGTCAGAGCCAGGGTGGGTCGGCTGACTGG
AGTGCCAGTCCAGGAGGCACAGGGGTGCAGCAATGTGTGTCCTTGCAGGGGCACACGCTC
TCCTCAGTTTCAGGAACTAGGTGGCCTTGTCCCTGAGAGAGCCCTTCAGTGGGATCAGGA
TGATGTCACTGCACAATTAAAGCTCAGTCCCTGCCCTCCCCCCCACTCCTGCTGGTAGAG
GGCACACCTCTGAAGAGGGCTTTCTTTCTTTCTCTCTCTCTTTTGTTTTGTTTTGCTTTG
CTTTTTAGGGCTTTACCCGCGGCATATGAGGGTTCCCAGGCTAGGAGTCGAATCAGAGCT
GTAGCTGCCAACCTATGCCACAGCCACAGCAACATGGAATCTGAGTCGCATCTGTGATCT
ACACCACAGCTCACGGCAACACCGGGTCCTTAACTCACTGAGCAAGGCCAAGGATCAAAC
CTGCATCCTCATGGATGCTAGTCAGGTTTGCTTCCACTGAACCACAGCAGGAACTGAGAG
GGCTTTCTGGTTGTACCTGCCAATGGTGACCCTGAATCCAGCTCCACCATTTGCAGAATT
TTCCAGGGGAATACTCAGATGTGCAAAAAAATACTTGTCACTGCTCTACTTAATACAAAA
TAGAAACAACCATAACACCAGGAATGGGGAAACCAGCTAAATCAATGATAATACATATAA
TGGAACACCAGGCAGTTGTAAAATCTCGTGGAAAATTATTTACTGACACAGGCAGGAGAT
GGTTCACAACAGAAGCAAGCAAAAAACAGTGTGTAGAGTGTGATACCAGCTTTTTGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGATGCCTGCCTGCCTGCCTACTCAAAGGCTCTCTGTGCCCCAAAGCCTTGATTCACGG
CCTGAGCAATTTCTGTTGTTCATGCACAGAGCTTGGCAACCCATGCCCTCTGGGACAGAT
GCCATCCTTAGAAACTCCAGTCGTATGAAGGGTCAGAGCCAGGGTGGGTCGGCTGACTGG
AGTGCCAGTCCAGGAGGCACAGGGGTGCAGCAATGTGTGTCCTTGCAGGGGCACACGCTC
TCCTCAGTTTCAGGAACTAGGTGGCCTTGTCCCTGAGAGAGCCCTTCAGTGGGATCAGGA
TGATGTCACTGCACAATTAAAGCTCAGTCCCTGCCCTCCCCCCCACTCCTGCTGGTAGAG
GGCACACCTCTGAAGAGGGCTTTCTTTCTTTCTCTCTCTCTTTTGTTTTGTTTTGCTTTG
CTTTTTAGGGCTTTACCCGCGGCATATGAGGGTTCCCAGGCTAGGAGTCGAATCAGAGCT
GTAGCTGCCAACCTATGCCACAGCCACAGCAACATGGAATCTGAGTCGCATCTGTGATCT
ACACCACAGCTCACGGCAACACCGGGTCCTTAACTCACTGAGCAAGGCCAAGGATCAAAC
CTGCATCCTCATGGATGCTAGTCAGGTTTGCTTCCACTGAACCACAGCAGGAACTGAGAG
GGCTTTCTGGTTGTACCTGCCAATGGTGACCCTGAATCCAGCTCCACCATTTGCAGAATT
TTCCAGGGGAATACTCAGATGTGCAAAAAAATACTTGTCACTGCTCTACTTAATACAAAA
TAGAAACAACCATAACACCAGGAATGGGGAAACCAGCTAAATCAATGATAATACATATAA
TGGAACACCAGGCAGTTGTAAAATCTCGTGGAAAATTATTTACTGACACAGGCAGGAGAT
GGTTCACAACAGAAGCAAGCAAAAAACAGTGTGTAGAGTGTGATACCAGCTTTTTGTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               132-273, + strand, RNAz p=0.980421

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-273, + strand, RNAz p=0.980421

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               13-385, gnl|bosTau2|chr13 (33738200-33738567)
               

               
               13-385, gnl|Hg17|chr20 (3684911-3685324)
               


               
               657-960, gnl|bosTau2|chr13 (33738556-33738873)
               

               
               657-960, gnl|Hg17|chr20 (3685313-3685619)
               

               
               657-960, gnl|Mm7|chr2 (130891228-130891616)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-385, gnl|bosTau2|chr13 (33738200-33738567)
               

               
               13-385, gnl|Hg17|chr20 (3684911-3685324)
               


               
               657-960, gnl|bosTau2|chr13 (33738556-33738873)
               

               
               657-960, gnl|Hg17|chr20 (3685313-3685619)
               

               
               657-960, gnl|Mm7|chr2 (130891228-130891616)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)

	13-385, gnl\|bosTau2\|chr13 (33738200-33738567)
	13-385, gnl\|Hg17\|chr20 (3684911-3685324)

	657-960, gnl\|bosTau2\|chr13 (33738556-33738873)
	657-960, gnl\|Hg17\|chr20 (3685313-3685619)
	657-960, gnl\|Mm7\|chr2 (130891228-130891616)