Non-Coding RNA Search

Ss1.1-Pig2-51H12.5

Sequence:


               
               GCCTCCGTGTCCTTTGAGTCAGAGGTCATCTGTCCCCTCTCTCCTGCAGACAGAAGCAGA
GGGAGTTGAGCAGACAGCAGCCGGGGGGAGCAGGGAGGGCTTCCAGAATTTCCTCCCAGA
AGCCAGGAGGGCCGCCCTCTGTTTTGTAAACCAGGGCTAACAAGAGTCTGCGAAATTAGA
CAAGGGACTGGTGGAGCCTAGAGGACACTGGGAGAACTGGTCAGGCCCCGACGACCCCCT
CCCTCAACCTTCTACCCATCTGACTCCTGCAGGGGGGATCTTGGATGTGTTCTCTGAAAA
GAATTTTGCTACAATCATCTTTCTAACCCTCTCCCAGCAGGGGAGAACCTGGGCACATGC
CAGCCCCACCCACAGGTGGCCCATCCAGGCTGGTATTTGTCTGCAAGGCTGTAGTCAAGA
AGTTGCTTGTTTGTTTGTTTCTGTTTTATTTGTCTTTTAATTCAGATACTCCTTGAAAGG
TGTGTATGTGGACGGGCAGGGGGCAGATCTGAGGATCGAGGCTGGGATGTGGGGCTTAGC
ACCAAATACAGTCCCTGGCTCCCCCAAACACCCTCATACCAAGCACCCCACGGTTGGTGC
TGGGTCGTTATTTCTGAGCCCCCACTCCAATCCAGAGAAGAACTCCCCCCTCCTGCGCCG
CCACTAGATGAACAGCAGGATGGCTTGTGGGGGGCTCGGAGTCTCTGTGGGTGGGAATAC
GGTGACCTTGGGGACAGTATCTGGATTCCAGATCAGGGACATTGCTGATGAGCCCTCTTT
CACTGGCCCCATCCCATTGGGTCCCTTGCTTCAAACCCTTGATGCGGGGCCTCAACGCCT
GTCCTATGTCCTGAAAGACACTCTCCGGGGCCAGGCCTAAGGGACAGTCCTCTGTCTCCG
GGCCGGGCGTCTGCTGTCTGTCCTGCTTTCATGTTGCCGCTGCAGCTTGCGCTGAGCCCG
CCTAGTTGGAGATGACTGGGCATTCCTGCCCCCCGCCTTCCACCACCCCATCTCAGTCCC
TACTCCTCCCCCCGAAACCTGTGCCCTGGCCAGGCTGGAGACCCCCAGCCCCCAAACGAG
AAGTGCCCTTAAGAACCCCCCAGCCCTCGCAGTCCTGGAATAAATTTTGCAATTAGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCCGTGTCCTTTGAGTCAGAGGTCATCTGTCCCCTCTCTCCTGCAGACAGAAGCAGA
GGGAGTTGAGCAGACAGCAGCCGGGGGGAGCAGGGAGGGCTTCCAGAATTTCCTCCCAGA
AGCCAGGAGGGCCGCCCTCTGTTTTGTAAACCAGGGCTAACAAGAGTCTGCGAAATTAGA
CAAGGGACTGGTGGAGCCTAGAGGACACTGGGAGAACTGGTCAGGCCCCGACGACCCCCT
CCCTCAACCTTCTACCCATCTGACTCCTGCAGGGGGGATCTTGGATGTGTTCTCTGAAAA
GAATTTTGCTACAATCATCTTTCTAACCCTCTCCCAGCAGGGGAGAACCTGGGCACATGC
CAGCCCCACCCACAGGTGGCCCATCCAGGCTGGTATTTGTCTGCAAGGCTGTAGTCAAGA
AGTTGCTTGTTTGTTTGTTTCTGTTTTATTTGTCTTTTAATTCAGATACTCCTTGAAAGG
TGTGTATGTGGACGGGCAGGGGGCAGATCTGAGGATCGAGGCTGGGATGTGGGGCTTAGC
ACCAAATACAGTCCCTGGCTCCCCCAAACACCCTCATACCAAGCACCCCACGGTTGGTGC
TGGGTCGTTATTTCTGAGCCCCCACTCCAATCCAGAGAAGAACTCCCCCCTCCTGCGCCG
CCACTAGATGAACAGCAGGATGGCTTGTGGGGGGCTCGGAGTCTCTGTGGGTGGGAATAC
GGTGACCTTGGGGACAGTATCTGGATTCCAGATCAGGGACATTGCTGATGAGCCCTCTTT
CACTGGCCCCATCCCATTGGGTCCCTTGCTTCAAACCCTTGATGCGGGGCCTCAACGCCT
GTCCTATGTCCTGAAAGACACTCTCCGGGGCCAGGCCTAAGGGACAGTCCTCTGTCTCCG
GGCCGGGCGTCTGCTGTCTGTCCTGCTTTCATGTTGCCGCTGCAGCTTGCGCTGAGCCCG
CCTAGTTGGAGATGACTGGGCATTCCTGCCCCCCGCCTTCCACCACCCCATCTCAGTCCC
TACTCCTCCCCCCGAAACCTGTGCCCTGGCCAGGCTGGAGACCCCCAGCCCCCAAACGAG
AAGTGCCCTTAAGAACCCCCCAGCCCTCGCAGTCCTGGAATAAATTTTGCAATTAGTTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-237, - strand, RNAz p=0.786689
               

               
               876-984, + strand, RNAz p=0.567952

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-237, - strand, RNAz p=0.786689
               

               
               876-984, + strand, RNAz p=0.567952

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC032501, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC032501, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1140, gnl|bosTau2|chr11 (72811639-72810493)
               

               
               1-1140, gnl|Hg17|chr9 (124324238-124323071)
               

               
               1-1140, gnl|Mm7|chr2 (38701031-38699972)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1140, gnl|bosTau2|chr11 (72811639-72810493)
               

               
               1-1140, gnl|Hg17|chr9 (124324238-124323071)
               

               
               1-1140, gnl|Mm7|chr2 (38701031-38699972)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.453583)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               cov (0.132153)

	41-237, - strand, RNAz p=0.786689
	876-984, + strand, RNAz p=0.567952

	1-1140, gnl\|bosTau2\|chr11 (72811639-72810493)
	1-1140, gnl\|Hg17\|chr9 (124324238-124323071)
	1-1140, gnl\|Mm7\|chr2 (38701031-38699972)