Non-Coding RNA Search

Ss1.1-Pig2-51K18.5

Sequence:


               
               GGTAACATTTCCAAACAGTCTTTCAGGGATCGTGTCAGTGGCCTACATACAACCAAGGTA
TTTGTCTCCTGCTTTGAGTCTTAACTGTGATTTTTTTCCAGTTCCAGTGTTGAAAGGGCT
TCAAGGCACCACCAGTGGTATTTAATATTAGTATTTATGCCATACGTTTAATTTCAGATC
CACCCATTGCAATATCCACTTGGGAAAGTAGGCGTCTAACTGGAGAAGGACTGCAGTAGC
CTCTCCTCAGCTGTCGAGGGTTACCCTCTGACACGCTTAGGCCCCAGCCTGTTGATTTGA
TTTCTCCATCTCCTTTTCTTCCAGTCCCTTCTTTTGGCCACTGCTTTCAAAGAGTCTGCC
CGGAAGTGTCCCCTCCATTCTGTTGGGCATTTGCTGAACTAAACTGACCATGTGCTAACT
TCTAGCTATTTGGGAAAGCTGCCTGGTCTCAGTGCTGGCTTCCCCCTCCCCACGCTGCTG
CGGAAGTGAAGTTGGGGCGGAGCAGCAGCAGCAACGCTGCGCTTTCCCGGGGAAGGGTGT
CAAGGACGCCCTCACACCAAATCCAGGTGTTTGCTTTTGTGAGGTCTCTGATAACTTAGG
AATGCTGAAAACCAAGCGACATGTATCCCGACTCCCCCCTTGCCCCTCTGTGCCACACTA
ATTTTGTGATTTAGGTTGCTTTCATGGGTAACTAACTTTGTTCAGTGAAACCAGGGTACG
TGTTTGGGTTTTTTCTTTGCTACTTATATGTTTAAAGGTACATGTTTCTTATTTCAGACC
TCTACTGATAGTGCCCTGTGGGAAGATGCTGGAACACATTTTGCAAATGTGACTTTTTTT
TTTTTTTTAATTTTGCTTGAAGCCTGTGTCATAATGTCAATTGCTGCTGCCTTCTTTCCT
TTTAGAGGTTCCCAATGTTTCTTCCAGAAAATTACTTTATTTATGCAAGTCAGGTGACTC
TTAGACCACGAAACCATTTGATGATAAACAGATTATCATTAGGTGCATATCTTATTGATA
TTTTGTGAAATGTTATGCCTGTGTTGCAAAAGTTGACTAGTTTTGTCTTTATATATTGCT
GTCTTCAGTGTACAGCATGGTTTTACTTAATTGAATGTTACTGTTTAATATTTTCTTCTT
ATAGAAGAGCCCATGCCCTTTTGTATGACATGTTTTAATAAATGTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAACATTTCCAAACAGTCTTTCAGGGATCGTGTCAGTGGCCTACATACAACCAAGGTA
TTTGTCTCCTGCTTTGAGTCTTAACTGTGATTTTTTTCCAGTTCCAGTGTTGAAAGGGCT
TCAAGGCACCACCAGTGGTATTTAATATTAGTATTTATGCCATACGTTTAATTTCAGATC
CACCCATTGCAATATCCACTTGGGAAAGTAGGCGTCTAACTGGAGAAGGACTGCAGTAGC
CTCTCCTCAGCTGTCGAGGGTTACCCTCTGACACGCTTAGGCCCCAGCCTGTTGATTTGA
TTTCTCCATCTCCTTTTCTTCCAGTCCCTTCTTTTGGCCACTGCTTTCAAAGAGTCTGCC
CGGAAGTGTCCCCTCCATTCTGTTGGGCATTTGCTGAACTAAACTGACCATGTGCTAACT
TCTAGCTATTTGGGAAAGCTGCCTGGTCTCAGTGCTGGCTTCCCCCTCCCCACGCTGCTG
CGGAAGTGAAGTTGGGGCGGAGCAGCAGCAGCAACGCTGCGCTTTCCCGGGGAAGGGTGT
CAAGGACGCCCTCACACCAAATCCAGGTGTTTGCTTTTGTGAGGTCTCTGATAACTTAGG
AATGCTGAAAACCAAGCGACATGTATCCCGACTCCCCCCTTGCCCCTCTGTGCCACACTA
ATTTTGTGATTTAGGTTGCTTTCATGGGTAACTAACTTTGTTCAGTGAAACCAGGGTACG
TGTTTGGGTTTTTTCTTTGCTACTTATATGTTTAAAGGTACATGTTTCTTATTTCAGACC
TCTACTGATAGTGCCCTGTGGGAAGATGCTGGAACACATTTTGCAAATGTGACTTTTTTT
TTTTTTTTAATTTTGCTTGAAGCCTGTGTCATAATGTCAATTGCTGCTGCCTTCTTTCCT
TTTAGAGGTTCCCAATGTTTCTTCCAGAAAATTACTTTATTTATGCAAGTCAGGTGACTC
TTAGACCACGAAACCATTTGATGATAAACAGATTATCATTAGGTGCATATCTTATTGATA
TTTTGTGAAATGTTATGCCTGTGTTGCAAAAGTTGACTAGTTTTGTCTTTATATATTGCT
GTCTTCAGTGTACAGCATGGTTTTACTTAATTGAATGTTACTGTTTAATATTTTCTTCTT
ATAGAAGAGCCCATGCCCTTTTGTATGACATGTTTTAATAAATGTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1042-1188, + strand, RNAz p=0.932389

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1042-1188, + strand, RNAz p=0.932389

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-266, gnl|bosTau2|chr11 (75119432-75119169)
               

               
               1-266, gnl|Hg17|chr9 (126678501-126679093)
               


               
               530-1188, gnl|bosTau2|chr11 (75118898-75118248)
               

               
               530-1188, gnl|Hg17|chr9 (126679385-126680026)
               

               
               530-1188, gnl|Mm7|chr2 (33458206-33457616)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-266, gnl|bosTau2|chr11 (75119432-75119169)
               

               
               1-266, gnl|Hg17|chr9 (126678501-126679093)
               


               
               530-1188, gnl|bosTau2|chr11 (75118898-75118248)
               

               
               530-1188, gnl|Hg17|chr9 (126679385-126680026)
               

               
               530-1188, gnl|Mm7|chr2 (33458206-33457616)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               vin (0.332557)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

	1-266, gnl\|bosTau2\|chr11 (75119432-75119169)
	1-266, gnl\|Hg17\|chr9 (126678501-126679093)

	530-1188, gnl\|bosTau2\|chr11 (75118898-75118248)
	530-1188, gnl\|Hg17\|chr9 (126679385-126680026)
	530-1188, gnl\|Mm7\|chr2 (33458206-33457616)