Non-Coding RNA Search

Ss1.1-Pig2-51M04.5

Sequence:


               
               AAAGCAGAGTCCAGTGAGCTGGTGCGTAACAGCTACCACACGTGGCTGTACCAGGGTGAA
GGTGCCCATCACGTCATGCGTGCCATCCGCCAGAGGGTGCTGCGCCTCACCCGCCTGTCA
CCTGAGATCGTGGAGCTCAGCGAGCCGCTGCAGGTCGTGCGGTATGGCGAGGGAGGCCAC
TACCATGCCCATGTGGACAGCGGGCCTGTGTACCCAGAGACCATCTGCTCCCATACCAAG
CTGGTAGCCAACGAGTCTGTACCCTTTGAGACCTCCTGCCGCTACATGACAGTGCTGTTT
TATTTGAACAACGTCACCGGTGGGGGCGAGACTGTCTTCCCTGTAGCAGACAACAGAACC
TATGATGAAATGAGTCTGATTCAGGATGACATTGACCTCCGTGACACTCGGAGGCACTGT
GACAAGGGGAACCTGCGTGTCAAGCCCCGTCAGGGCACAGCAGTCTTCTGGTACAACTAC
CTGCCTGATGGGCAAGGTTGGGTGGGCGATGTGGACGACTACTCGCTGCACGGGGGCTGC
CTGGTCACACGCGGAACTAAATGGATTGCCAACAACTGGATCAACGTGGACCCCAGCCGG
GCGCGGCAGGCGCTCTTCCAGCAGGAGATGGCGCGCCTGGCCCGCGAAGGTGGCGCCGAC
TCGCAGCCGGAGTGGGCCCTGGACAGGGCCTACCGCAACGCGCGTGTGGAGCTCTGAGGG
GAGTGTCCACCCTGAGGTCGGGGCCCTGCCGTCCCTCTGTCTAGCCGCAGGTCAAAGGCC
TGGCCATTGTCTTGCCCCATCCCTGCCTCCAGCCACGATTAGGACATAGCTCCTATATCA
ATGTTATTTATTGTGTACAGACCTATGCTGCCCCGACAAATAAAACTACACGGTTTGGAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCAGAGTCCAGTGAGCTGGTGCGTAACAGCTACCACACGTGGCTGTACCAGGGTGAA
GGTGCCCATCACGTCATGCGTGCCATCCGCCAGAGGGTGCTGCGCCTCACCCGCCTGTCA
CCTGAGATCGTGGAGCTCAGCGAGCCGCTGCAGGTCGTGCGGTATGGCGAGGGAGGCCAC
TACCATGCCCATGTGGACAGCGGGCCTGTGTACCCAGAGACCATCTGCTCCCATACCAAG
CTGGTAGCCAACGAGTCTGTACCCTTTGAGACCTCCTGCCGCTACATGACAGTGCTGTTT
TATTTGAACAACGTCACCGGTGGGGGCGAGACTGTCTTCCCTGTAGCAGACAACAGAACC
TATGATGAAATGAGTCTGATTCAGGATGACATTGACCTCCGTGACACTCGGAGGCACTGT
GACAAGGGGAACCTGCGTGTCAAGCCCCGTCAGGGCACAGCAGTCTTCTGGTACAACTAC
CTGCCTGATGGGCAAGGTTGGGTGGGCGATGTGGACGACTACTCGCTGCACGGGGGCTGC
CTGGTCACACGCGGAACTAAATGGATTGCCAACAACTGGATCAACGTGGACCCCAGCCGG
GCGCGGCAGGCGCTCTTCCAGCAGGAGATGGCGCGCCTGGCCCGCGAAGGTGGCGCCGAC
TCGCAGCCGGAGTGGGCCCTGGACAGGGCCTACCGCAACGCGCGTGTGGAGCTCTGAGGG
GAGTGTCCACCCTGAGGTCGGGGCCCTGCCGTCCCTCTGTCTAGCCGCAGGTCAAAGGCC
TGGCCATTGTCTTGCCCCATCCCTGCCTCCAGCCACGATTAGGACATAGCTCCTATATCA
ATGTTATTTATTGTGTACAGACCTATGCTGCCCCGACAAATAAAACTACACGGTTTGGAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12653607|gb|AAH00580.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12653607|gb|AAH00580.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               164-281, - strand, RNAz p=0.642255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-281, - strand, RNAz p=0.642255

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               76-281, gnl|bosTau2|chr22 (40000868-40001071)
               

               
               76-281, gnl|Hg17|chr3 (49017280-49017483)
               

               
               76-281, gnl|Mm7|chr9 (108293688-108293484)
               


               
               495-721, gnl|bosTau2|chr22 (40002745-40002971)
               

               
               495-721, gnl|Hg17|chr3 (49019122-49019348)
               

               
               495-721, gnl|Mm7|chr9 (108292075-108291849)
               


               
               728-893, gnl|bosTau2|chr22 (40002999-40003164)
               

               
               728-893, gnl|Hg17|chr3 (49019378-49019545)
               

               
               728-893, gnl|Mm7|chr9 (108291823-108291653)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-281, gnl|bosTau2|chr22 (40000868-40001071)
               

               
               76-281, gnl|Hg17|chr3 (49017280-49017483)
               

               
               76-281, gnl|Mm7|chr9 (108293688-108293484)
               


               
               495-721, gnl|bosTau2|chr22 (40002745-40002971)
               

               
               495-721, gnl|Hg17|chr3 (49019122-49019348)
               

               
               495-721, gnl|Mm7|chr9 (108292075-108291849)
               


               
               728-893, gnl|bosTau2|chr22 (40002999-40003164)
               

               
               728-893, gnl|Hg17|chr3 (49019378-49019545)
               

               
               728-893, gnl|Mm7|chr9 (108291823-108291653)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.302389)
               

               
               ece (0.229305)
               

               
               fty (0.17584)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               ece (0.229305)
               

               
               fty (0.17584)

	76-281, gnl\|bosTau2\|chr22 (40000868-40001071)
	76-281, gnl\|Hg17\|chr3 (49017280-49017483)
	76-281, gnl\|Mm7\|chr9 (108293688-108293484)

	495-721, gnl\|bosTau2\|chr22 (40002745-40002971)
	495-721, gnl\|Hg17\|chr3 (49019122-49019348)
	495-721, gnl\|Mm7\|chr9 (108292075-108291849)

	728-893, gnl\|bosTau2\|chr22 (40002999-40003164)
	728-893, gnl\|Hg17\|chr3 (49019378-49019545)
	728-893, gnl\|Mm7\|chr9 (108291823-108291653)