Non-Coding RNA Search

Ss1.1-Pig2-51N08.5

Sequence:


               
               TATTGAGAAGTGTAAATACTATATATGAGAGGATCTATATAAAGACATCTACCGAAGGAC
TGGCCCGCCCGGAGACGCCGCCAGCCGGGCCGGTGCTATCTTGTCGCCAGGCTCGCGCCT
CCATGTCCTCTTGGTGCTGACTCTCGAGGTTGACCAACGCCAAACCAGTCCTTTGAAGCG
CCTGCCCAGTGTGTCCCCACCACTCTTCCTATACCAAAGGCAGCGTCTCCAGGTGGAGGC
GGTTCCTCAGAGAAGGCCCGCCCACTCAGCACTGTGAACGGACGCAGCCCGGTCCGGGAT
CCGCCTTTGGCATAGGAAGGGCCGGGTCCACCAGCGGCAAGGCTGCAGTGGCGGAGCCTC
AAGGAGGGGACCCGCTCTGAGTGGTGCTGTGAGGAGGGTCTGGTACCCGACTCTTGCCTG
GCTGGCTCGTGTGACAAGTGCATTTACTTTTGTACGTCTCTGCTCATCCTGCTCGCGCCG
CAGGCCACCCATGCAGGGTTGGCTCCCATAGTGGTGGTTGGAAATGCGGGCAGGTTAGTT
GTGGGTGCCTGGTGTGTCTACAGGAGAGTCACGCTGACGGGTGACAGTATTTTATAGAGA
TGTGATGAAAATTTATAAATTTCATAGACTTGACTTCATTTATTTTTAGATTTTATGACG
AATGCACAGTAAACTAAAGAGAAAAGTGAGGGGAAACCTTCCTATTAAAGTGCACGGTGG
CGCTGGCCCAGGGTCTGCCCACCAACCCCACAGCTGGGGATGACACCTGCCCCATGTGGA
GGGGCCATGGTGGTGCTTGGGAACAGGAGCATTGGGGGTGGCCGGGCAGCAGGCATCCCC
TGAGGCCCCCAGGTAGCCGGAAGGGCTCTCACCCCTCTTGCATAGTTTTTGTGACCGGTC
CTGGGTTCCTGGTGGGGCAGTGTTGTCTGTGCCTCCTGAGCACTTCTCAGTCCCCTGAAA
GGGCGGACATTGGCCAAAGGTGCTGGCAGGGAGCCCAGACTCTTGAGATGGGTGCCCTGG
CCAAGGCTGGGTGCAAGGGGTCAGAGCCCCGTCCTTAGGTGCTTGCTCCAGAGATGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTGAGAAGTGTAAATACTATATATGAGAGGATCTATATAAAGACATCTACCGAAGGAC
TGGCCCGCCCGGAGACGCCGCCAGCCGGGCCGGTGCTATCTTGTCGCCAGGCTCGCGCCT
CCATGTCCTCTTGGTGCTGACTCTCGAGGTTGACCAACGCCAAACCAGTCCTTTGAAGCG
CCTGCCCAGTGTGTCCCCACCACTCTTCCTATACCAAAGGCAGCGTCTCCAGGTGGAGGC
GGTTCCTCAGAGAAGGCCCGCCCACTCAGCACTGTGAACGGACGCAGCCCGGTCCGGGAT
CCGCCTTTGGCATAGGAAGGGCCGGGTCCACCAGCGGCAAGGCTGCAGTGGCGGAGCCTC
AAGGAGGGGACCCGCTCTGAGTGGTGCTGTGAGGAGGGTCTGGTACCCGACTCTTGCCTG
GCTGGCTCGTGTGACAAGTGCATTTACTTTTGTACGTCTCTGCTCATCCTGCTCGCGCCG
CAGGCCACCCATGCAGGGTTGGCTCCCATAGTGGTGGTTGGAAATGCGGGCAGGTTAGTT
GTGGGTGCCTGGTGTGTCTACAGGAGAGTCACGCTGACGGGTGACAGTATTTTATAGAGA
TGTGATGAAAATTTATAAATTTCATAGACTTGACTTCATTTATTTTTAGATTTTATGACG
AATGCACAGTAAACTAAAGAGAAAAGTGAGGGGAAACCTTCCTATTAAAGTGCACGGTGG
CGCTGGCCCAGGGTCTGCCCACCAACCCCACAGCTGGGGATGACACCTGCCCCATGTGGA
GGGGCCATGGTGGTGCTTGGGAACAGGAGCATTGGGGGTGGCCGGGCAGCAGGCATCCCC
TGAGGCCCCCAGGTAGCCGGAAGGGCTCTCACCCCTCTTGCATAGTTTTTGTGACCGGTC
CTGGGTTCCTGGTGGGGCAGTGTTGTCTGTGCCTCCTGAGCACTTCTCAGTCCCCTGAAA
GGGCGGACATTGGCCAAAGGTGCTGGCAGGGAGCCCAGACTCTTGAGATGGGTGCCCTGG
CCAAGGCTGGGTGCAAGGGGTCAGAGCCCCGTCCTTAGGTGCTTGCTCCAGAGATGGCAC

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-752, gnl|bosTau2|chr7 (18165770-18166499)
               

               
               1-752, gnl|Hg17|chr19 (2181064-2181828)
               

               
               1-752, gnl|Mm7|chr10 (80583366-80584095)
               


               
               522-685, gnl|bosTau2|chr27 (18898664-18898826)
               

               
               522-685, gnl|Hg17|chr19 (2181581-2181724)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-752, gnl|bosTau2|chr7 (18165770-18166499)
               

               
               1-752, gnl|Hg17|chr19 (2181064-2181828)
               

               
               1-752, gnl|Mm7|chr10 (80583366-80584095)
               


               
               522-685, gnl|bosTau2|chr27 (18898664-18898826)
               

               
               522-685, gnl|Hg17|chr19 (2181581-2181724)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               clu (0.119646)

	1-752, gnl\|bosTau2\|chr7 (18165770-18166499)
	1-752, gnl\|Hg17\|chr19 (2181064-2181828)
	1-752, gnl\|Mm7\|chr10 (80583366-80584095)

	522-685, gnl\|bosTau2\|chr27 (18898664-18898826)
	522-685, gnl\|Hg17\|chr19 (2181581-2181724)