Non-Coding RNA Search

Ss1.1-Pig2-52D05.5

Sequence:


               
               GGCGCGCGAAGAAGATTAGCTCTTCAGACCGCGATCGGAGGAGGCGCGAGCAGTTTTGGG
TAACGCTGTTCTGCTGACCTGACAAGACCCAAACGTAGTCTTGGCCCCAGCTCTGGCTTC
AGCCTCGGCCCGACGAGGCAATGGCTAAGGTGTCGGTGCTGAACGTGGCTGTTCTGGAGA
ATCCGAGCCCTTTCCACAGCCCCTTCCGGTTCGAGATCAGCTTCGAGTGCAATGAGGCCC
TGACGGACGACCTGGAGTGGAAGATCATTTACGTTGGCTCAGCTGAGAGTGAGGAGTTTG
ATCAAATCCTAGACTCGGTACTGGTCGGCCCTGTCCCAGCAGGGAGACACATGTTTGTCT
TTCAGGCTGATGCCCCCAATCCATCCCTCATCCCTGAGACCGACGCGGTAGGTGTGACCG
TGGTCCTCATCACCTGCACCTACCACGGACAGGAGTTCATCCGCGTGGGCTACTATGTCA
ACAATGAGTACCCCAACCCTGAGCTGCGGGAGAACCCACCCCTGAAGCCAGACTTCTCTC
AGCTCCAGCGGAATATCTTGGCCTCAAACCCTAGGGTGACCCGTTTCCACATCAACTGGG
ACAACAATACAGACAGGCTGGAAGCCATAGAGAACCAGGACCCCGCACTGGGCTGCGGCT
TCCCCCTCAGCTGCACTCCTATCAAGGGCTTGGGTCTCCCTGGCTGCATCCCTGGCCTCC
TCCCTGAGAACTCCATGGACTGTATCTAACTGTGGGACTCTAGGCCCTACCTGAGCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCGCGAAGAAGATTAGCTCTTCAGACCGCGATCGGAGGAGGCGCGAGCAGTTTTGGG
TAACGCTGTTCTGCTGACCTGACAAGACCCAAACGTAGTCTTGGCCCCAGCTCTGGCTTC
AGCCTCGGCCCGACGAGGCAATGGCTAAGGTGTCGGTGCTGAACGTGGCTGTTCTGGAGA
ATCCGAGCCCTTTCCACAGCCCCTTCCGGTTCGAGATCAGCTTCGAGTGCAATGAGGCCC
TGACGGACGACCTGGAGTGGAAGATCATTTACGTTGGCTCAGCTGAGAGTGAGGAGTTTG
ATCAAATCCTAGACTCGGTACTGGTCGGCCCTGTCCCAGCAGGGAGACACATGTTTGTCT
TTCAGGCTGATGCCCCCAATCCATCCCTCATCCCTGAGACCGACGCGGTAGGTGTGACCG
TGGTCCTCATCACCTGCACCTACCACGGACAGGAGTTCATCCGCGTGGGCTACTATGTCA
ACAATGAGTACCCCAACCCTGAGCTGCGGGAGAACCCACCCCTGAAGCCAGACTTCTCTC
AGCTCCAGCGGAATATCTTGGCCTCAAACCCTAGGGTGACCCGTTTCCACATCAACTGGG
ACAACAATACAGACAGGCTGGAAGCCATAGAGAACCAGGACCCCGCACTGGGCTGCGGCT
TCCCCCTCAGCTGCACTCCTATCAAGGGCTTGGGTCTCCCTGGCTGCATCCCTGGCCTCC
TCCCTGAGAACTCCATGGACTGTATCTAACTGTGGGACTCTAGGCCCTACCTGAGCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NVP2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NVP2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               619-779, - strand, RNAz p=0.810449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               619-779, - strand, RNAz p=0.810449

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-249, gnl|bosTau2|chr7 (7669889-7670137)
               

               
               1-249, gnl|Hg17|chr19 (14108419-14108160)
               

               
               1-249, gnl|Mm7|chr8 (82534289-82534537)
               


               
               540-779, gnl|bosTau2|chr7 (7681120-7681359)
               

               
               540-779, gnl|Hg17|chr19 (14092480-14092248)
               

               
               540-779, gnl|Mm7|chr8 (82547731-82547962)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-249, gnl|bosTau2|chr7 (7669889-7670137)
               

               
               1-249, gnl|Hg17|chr19 (14108419-14108160)
               

               
               1-249, gnl|Mm7|chr8 (82534289-82534537)
               


               
               540-779, gnl|bosTau2|chr7 (7681120-7681359)
               

               
               540-779, gnl|Hg17|chr19 (14092480-14092248)
               

               
               540-779, gnl|Mm7|chr8 (82547731-82547962)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.151194)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	1-249, gnl\|bosTau2\|chr7 (7669889-7670137)
	1-249, gnl\|Hg17\|chr19 (14108419-14108160)
	1-249, gnl\|Mm7\|chr8 (82534289-82534537)

	540-779, gnl\|bosTau2\|chr7 (7681120-7681359)
	540-779, gnl\|Hg17\|chr19 (14092480-14092248)
	540-779, gnl\|Mm7\|chr8 (82547731-82547962)